Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00732 ATGCAAGATCCGGCGTCAAATCCCGATTCCTCCATCTCCAACAATGCTTCTACTCCCAACACTCATCTTCCGCCGCCGCCGCCGCCCTCTTCTACTAGACCCCACCACCGCAGGGCCCACTCCGAACTCACATTTCGGTTCCCTGATGACATCATGGATCTCTCTTCCTCTGATCCCTTCACTGCCGGATCCGCCGCCCTCGCTTTAGACGAGATCGGATCTGAGGACGACCTCTTTTCCACCTACATTGATGTAGACAAGCTTGGTCCCGGCACTTCTTCTGCAGATCACACCGCTAATGCTGAACCTGAGAAGACTCCCAGACCGAGGCATAGATATAGCAACTCTGTTGATGGTTCCACATCTACCAGTGTGTTTGGGGATGTACTGGACGCCAAGAAAGCTATGCCTCCTGATAAACTAGCTGAGCTTTGGACTCTTGATCCCAAGCGCGCCAAAAGGATTTTGGCCAATCGACAGTCTGCTTCCCGTTCTAAAGAGAGGAAGGCACGATACATGCAGGAGCTCGAGCGCAAAGTTCAGACCCTTCAAACAGAGGCGACAACTCTCTCAGCTCAACTCGCACTGTTCCAAAGGGATACGACAGGTCTTAGTAGTGAAAATACAGAACTTAAGCTTCGGTTGCAGGCAATGGAGCAACAGGCTCATTTGCGAGATGCCTTGAATGAAGCACTAAAGAACGAAGTTGAGAGGCTCAAAGTAGCCACTGGAGAGACATCAGGCGCCTCCGATTCCTTCAACTTGGGGGGAATGCCTCATATGCCATATTTAGCATCCAGTTTCTTTCCCCTTCATCAGCAGCCAGGTTCTGCCGGCACCCACAACATGCTGCAGATGCCATTATACGGCCATTCCTCATCAAACATGTCAATACATCCTCCGCATCATCAGCTGAATTCACATCAATTCTCTGATAACATGCAGAGTGATCCACTTGGGCGATTACAGGGTCTGGATATCAGCAGCAATGGATCTCCTCTGGTGAAATCAGAAGTCCCTTCTCTTTCTGCTAGTGAAAGTAGCGCCACATTTTGA 1056 50.38 MQDPASNPDSSISNNASTPNTHLPPPPPPSSTRPHHRRAHSELTFRFPDDIMDLSSSDPFTAGSAALALDEIGSEDDLFSTYIDVDKLGPGTSSADHTANAEPEKTPRPRHRYSNSVDGSTSTSVFGDVLDAKKAMPPDKLAELWTLDPKRAKRILANRQSASRSKERKARYMQELERKVQTLQTEATTLSAQLALFQRDTTGLSSENTELKLRLQAMEQQAHLRDALNEALKNEVERLKVATGETSGASDSFNLGGMPHMPYLASSFFPLHQQPGSAGTHNMLQMPLYGHSSSNMSIHPPHHQLNSHQFSDNMQSDPLGRLQGLDISSNGSPLVKSEVPSLSASESSATF 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3846794 3850175 - CmaCh01G007320.1 Cma01g00732 286425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00732 351 Gene3D - 149 200 - -
Cma01g00732 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 148 211 IPR004827 GO:0003700|GO:0006355
Cma01g00732 351 SUPERFAMILY Leucine zipper domain 150 201 IPR046347 GO:0003700|GO:0006355
Cma01g00732 351 Coils Coil 166 193 - -
Cma01g00732 351 MobiDBLite consensus disorder prediction 90 120 - -
Cma01g00732 351 Pfam bZIP transcription factor 150 206 IPR004827 GO:0003700|GO:0006355
Cma01g00732 351 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 348 - -
Cma01g00732 351 MobiDBLite consensus disorder prediction 1 19 - -
Cma01g00732 351 PANTHER ATBZIP TRANSCRIPTION FACTOR 7 348 - -
Cma01g00732 351 MobiDBLite consensus disorder prediction 291 351 - -
Cma01g00732 351 CDD bZIP_plant_RF2 151 200 IPR044759 GO:0003700|GO:0006355
Cma01g00732 351 SMART brlzneu 146 210 IPR004827 GO:0003700|GO:0006355
Cma01g00732 351 Coils Coil 225 245 - -
Cma01g00732 351 MobiDBLite consensus disorder prediction 1 44 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00732 Cma20g00307 CCT
Cma01g00732 Cma02g00696 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00732 Cma-Chr1:3846794 Cma02g00696 Cma-Chr2:4250304 2.37E-151 dispersed
Cma01g00732 Cma-Chr1:3846794 Cma20g00307 Cma-Chr20:1509757 7.05E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34277 PF00170 bZIP_1 1.30E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00732 - - cmo:103502961 410.994