Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00732 | ATGCAAGATCCGGCGTCAAATCCCGATTCCTCCATCTCCAACAATGCTTCTACTCCCAACACTCATCTTCCGCCGCCGCCGCCGCCCTCTTCTACTAGACCCCACCACCGCAGGGCCCACTCCGAACTCACATTTCGGTTCCCTGATGACATCATGGATCTCTCTTCCTCTGATCCCTTCACTGCCGGATCCGCCGCCCTCGCTTTAGACGAGATCGGATCTGAGGACGACCTCTTTTCCACCTACATTGATGTAGACAAGCTTGGTCCCGGCACTTCTTCTGCAGATCACACCGCTAATGCTGAACCTGAGAAGACTCCCAGACCGAGGCATAGATATAGCAACTCTGTTGATGGTTCCACATCTACCAGTGTGTTTGGGGATGTACTGGACGCCAAGAAAGCTATGCCTCCTGATAAACTAGCTGAGCTTTGGACTCTTGATCCCAAGCGCGCCAAAAGGATTTTGGCCAATCGACAGTCTGCTTCCCGTTCTAAAGAGAGGAAGGCACGATACATGCAGGAGCTCGAGCGCAAAGTTCAGACCCTTCAAACAGAGGCGACAACTCTCTCAGCTCAACTCGCACTGTTCCAAAGGGATACGACAGGTCTTAGTAGTGAAAATACAGAACTTAAGCTTCGGTTGCAGGCAATGGAGCAACAGGCTCATTTGCGAGATGCCTTGAATGAAGCACTAAAGAACGAAGTTGAGAGGCTCAAAGTAGCCACTGGAGAGACATCAGGCGCCTCCGATTCCTTCAACTTGGGGGGAATGCCTCATATGCCATATTTAGCATCCAGTTTCTTTCCCCTTCATCAGCAGCCAGGTTCTGCCGGCACCCACAACATGCTGCAGATGCCATTATACGGCCATTCCTCATCAAACATGTCAATACATCCTCCGCATCATCAGCTGAATTCACATCAATTCTCTGATAACATGCAGAGTGATCCACTTGGGCGATTACAGGGTCTGGATATCAGCAGCAATGGATCTCCTCTGGTGAAATCAGAAGTCCCTTCTCTTTCTGCTAGTGAAAGTAGCGCCACATTTTGA | 1056 | 50.38 | MQDPASNPDSSISNNASTPNTHLPPPPPPSSTRPHHRRAHSELTFRFPDDIMDLSSSDPFTAGSAALALDEIGSEDDLFSTYIDVDKLGPGTSSADHTANAEPEKTPRPRHRYSNSVDGSTSTSVFGDVLDAKKAMPPDKLAELWTLDPKRAKRILANRQSASRSKERKARYMQELERKVQTLQTEATTLSAQLALFQRDTTGLSSENTELKLRLQAMEQQAHLRDALNEALKNEVERLKVATGETSGASDSFNLGGMPHMPYLASSFFPLHQQPGSAGTHNMLQMPLYGHSSSNMSIHPPHHQLNSHQFSDNMQSDPLGRLQGLDISSNGSPLVKSEVPSLSASESSATF | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3846794 | 3850175 | - | CmaCh01G007320.1 | Cma01g00732 | 286425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00732 | 351 | Gene3D | - | 149 | 200 | - | - | |
Cma01g00732 | 351 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 148 | 211 | IPR004827 | GO:0003700|GO:0006355 | |
Cma01g00732 | 351 | SUPERFAMILY | Leucine zipper domain | 150 | 201 | IPR046347 | GO:0003700|GO:0006355 | |
Cma01g00732 | 351 | Coils | Coil | 166 | 193 | - | - | |
Cma01g00732 | 351 | MobiDBLite | consensus disorder prediction | 90 | 120 | - | - | |
Cma01g00732 | 351 | Pfam | bZIP transcription factor | 150 | 206 | IPR004827 | GO:0003700|GO:0006355 | |
Cma01g00732 | 351 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 348 | - | - | |
Cma01g00732 | 351 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cma01g00732 | 351 | PANTHER | ATBZIP TRANSCRIPTION FACTOR | 7 | 348 | - | - | |
Cma01g00732 | 351 | MobiDBLite | consensus disorder prediction | 291 | 351 | - | - | |
Cma01g00732 | 351 | CDD | bZIP_plant_RF2 | 151 | 200 | IPR044759 | GO:0003700|GO:0006355 | |
Cma01g00732 | 351 | SMART | brlzneu | 146 | 210 | IPR004827 | GO:0003700|GO:0006355 | |
Cma01g00732 | 351 | Coils | Coil | 225 | 245 | - | - | |
Cma01g00732 | 351 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00732 | Cma20g00307 | CCT | |
Cma01g00732 | Cma02g00696 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00732 | Cma-Chr1:3846794 | Cma02g00696 | Cma-Chr2:4250304 | 2.37E-151 | dispersed | |
Cma01g00732 | Cma-Chr1:3846794 | Cma20g00307 | Cma-Chr20:1509757 | 7.05E-154 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34277 | PF00170 | bZIP_1 | 1.30E-08 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00732 | - | - | cmo:103502961 | 410.994 |