Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00734 | ATGCATTTTATGCATCTGTTGCTTTGCATGCACTCTCTTTCTCTCTCCTTCCGCCATTTCCACGCCTTCCTCCTCCTCCTCTGCAACTGCCATCGCCTTCCCCCTTCGCTTCCTCCTCGTCACTGCATGAATACTTCTTGCGGAGCCGCCACGCCGCATGATTGGACCAAAGGATGGCCTCTGGGATCCGCTGGATTCGCGCATCTATGCCTCAACTGCGGATCTGCTTATGAAAATCTAGTCTTCTGTGATACGTATCACTTGGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATCCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATACCTGGATTATGGAGGTATAGGGTGTACTACGTGTGTGAAAAGATCTCGACTTGATGTGATCCGAAGAGATGAAATTTCTAATGGATTTGATGCAGTGACAGTTGGAAATGTTGGCCTTTTGCGACCTGCTTCTGTTGAGGATCGAGTGGTCCAAAATGGCATTAAAGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCTAATGAAACCAACCATTTTCAGCAAGCCCAAAGAGTTGACAGAAGTGCATCTCCAGCACAAAACAAAGGAGAAAATCTCAGGAGCCCATTTGGGGAAGTTGGAACAAGCTTCTTTAATATGACTAAACTACCTGTTAAATGCCAGCCATCGGTTGGTTCGGTAGCATACTCCCAACTAGATACTAGACTAAAAGATATGCAGGAATCTCTTAGTCAGCCATCGTTAAATATAGCTTTGGGGGTTCCATTAGGTACATCAAACTTTGTGGTACCCTTATCAGGAAGTGCAGCTGAAGAGGATGAAAAGAGCATTCTTCCATTTCAACCGGGCCAAAGATCTCGCCCAATTTTTCCTAAGCCCTTAAAAACTGGGACCACAGTTAATTCAGAAACAAGAAAGGGAATGACTCCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGGGGTAAGAACCAACTTCTTCCGAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAAATATCTGGAGATTTGAATTCTACTATTGTTCCTCTATTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTTCCCCCTATCTCTCAATCAGAGGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCAAACAACAACAGCAGAATGTATGTTTTGGAGGGCGTTACCCCTTGCATACAGTCCATGCAATTACAAGCTGGTGATACTGTTACCTTTAGTCGGATAGATCCTGGAGGCCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTTCTGATACACAGGATGCCAAGATCTCTACATTTCCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGGAGATATTAGTTTGCATAAAATCGAAAATTTTGGGGGTAGGATGACTTCAGGACAACAACCCATGTCAACCATGGACAAGAAGACTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTCCGGCCTCCACCAAGTGCAAATCCCACCATTGTCACAATCGATGACCATGAATTTGAGGAGTATGATGAACCTCCAGTTTTTGGCAAGAGAACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAAGTTGCCTGTGGATGTTCTTCTTCCTCCAAAGTGGACTTGTTCAGATAATATTTGGGATTTGAGCAGGCGTACATGTTCTGCACCGGAAGAGATGAACACAAAGGAACAGGAGAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTGCTCAAGAACTCGAGCCTTCTGGTTTGGATGCACTGGCTAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACGTGCAGGAATCAGGTACAACAACTAGGCATCCTCGACACCGACAAGGATGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCATAAATCCACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACGCTCATGCTTCGCAAGAAGAAACGCCTATCAGAACGTGAAATGGAGACTTCACTCAAGGAGGGGAATTCACAATTTGATGAATCAGGAACGAGTGGGACACTGAAGGGTACATCTCTGCAAACAAACCATTCAGAGAACGAAAGAAGTCAGATCCGAGTAAAAGATGAGGAGGCTGCAAATAGCAGTGGCCAAATTGACTTGAACTGCCACCCTGACCGGGAAGACATGCAACTGGAGGTAGCAGGATTAAGCATGATGAGTCTTGTTGAGGCTGCCAGCCAACCTTTAGATAGTTACTCAAAGCAAATTGGCGTCTCCAGCGTCACGAGTGAGCAACATTCCAGTCAACCAAGTAGCGCGGAGAGTGAGAGACGCCTGTCTGAGGAAGGGTGCCATGGATCAGCACACGAGAGCACAAGTGATAGATGCAGAGGGCACCATTGA | 2688 | 45.39 | MHFMHLLLCMHSLSLSFRHFHAFLLLLCNCHRLPPSLPPRHCMNTSCGAATPHDWTKGWPLGSAGFAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFEYLDYGGIGCTTCVKRSRLDVIRRDEISNGFDAVTVGNVGLLRPASVEDRVVQNGIKEEKLLQLCNIMEANETNHFQQAQRVDRSASPAQNKGENLRSPFGEVGTSFFNMTKLPVKCQPSVGSVAYSQLDTRLKDMQESLSQPSLNIALGVPLGTSNFVVPLSGSAAEEDEKSILPFQPGQRSRPIFPKPLKTGTTVNSETRKGMTPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQISGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPGGQLVMGFRKATNSSDTQDAKISTFPNGSHSGDASFSGVFQNLPLRAGDISLHKIENFGGRMTSGQQPMSTMDKKTRNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRKLPVDVLLPPKWTCSDNIWDLSRRTCSAPEEMNTKEQENLLRASKDFKKRKIMKSQKSAQELEPSGLDALASAAVLGDSMADVQESGTTTRHPRHRQGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRLSEREMETSLKEGNSQFDESGTSGTLKGTSLQTNHSENERSQIRVKDEEAANSSGQIDLNCHPDREDMQLEVAGLSMMSLVEAASQPLDSYSKQIGVSSVTSEQHSSQPSSAESERRLSEEGCHGSAHESTSDRCRGHH | 895 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3853364 | 3863072 | - | CmaCh01G007340.1 | Cma01g00734 | 286427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 291 | 313 | - | - | |
Cma01g00734 | 895 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 | 40 | 864 | - | - | |
Cma01g00734 | 895 | SMART | B3_2 | 366 | 466 | IPR003340 | GO:0003677 | |
Cma01g00734 | 895 | Pfam | B3 DNA binding domain | 366 | 465 | IPR003340 | GO:0003677 | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 191 | 208 | - | - | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 870 | 895 | - | - | |
Cma01g00734 | 895 | Gene3D | - | 597 | 650 | - | - | |
Cma01g00734 | 895 | ProSiteProfiles | B3 DNA-binding domain profile. | 366 | 467 | IPR003340 | GO:0003677 | |
Cma01g00734 | 895 | SUPERFAMILY | DNA-binding pseudobarrel domain | 363 | 467 | IPR015300 | - | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 850 | 895 | - | - | |
Cma01g00734 | 895 | ProSiteProfiles | Zinc finger CW-type profile. | 600 | 650 | IPR011124 | GO:0008270 | |
Cma01g00734 | 895 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 40 | 864 | - | - | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 191 | 212 | - | - | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 756 | 820 | - | - | |
Cma01g00734 | 895 | Pfam | CW-type Zinc Finger | 605 | 647 | IPR011124 | GO:0008270 | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 769 | 794 | - | - | |
Cma01g00734 | 895 | CDD | B3_DNA | 364 | 465 | IPR003340 | GO:0003677 | |
Cma01g00734 | 895 | MobiDBLite | consensus disorder prediction | 850 | 869 | - | - | |
Cma01g00734 | 895 | Gene3D | - | 344 | 471 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00734 | Cma-Chr1:3853364 | Cma06g00191 | Cma-Chr6:972527 | 0 | dispersed | |
Cma01g00734 | Cma-Chr1:3853364 | Cma07g00273 | Cma-Chr7:1214180 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34278 | PF02362 | B3 | 2.10E-16 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00734 | - | - | cmo:103497016 | 1484.16 |