Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00734 ATGCATTTTATGCATCTGTTGCTTTGCATGCACTCTCTTTCTCTCTCCTTCCGCCATTTCCACGCCTTCCTCCTCCTCCTCTGCAACTGCCATCGCCTTCCCCCTTCGCTTCCTCCTCGTCACTGCATGAATACTTCTTGCGGAGCCGCCACGCCGCATGATTGGACCAAAGGATGGCCTCTGGGATCCGCTGGATTCGCGCATCTATGCCTCAACTGCGGATCTGCTTATGAAAATCTAGTCTTCTGTGATACGTATCACTTGGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATCCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATACCTGGATTATGGAGGTATAGGGTGTACTACGTGTGTGAAAAGATCTCGACTTGATGTGATCCGAAGAGATGAAATTTCTAATGGATTTGATGCAGTGACAGTTGGAAATGTTGGCCTTTTGCGACCTGCTTCTGTTGAGGATCGAGTGGTCCAAAATGGCATTAAAGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCTAATGAAACCAACCATTTTCAGCAAGCCCAAAGAGTTGACAGAAGTGCATCTCCAGCACAAAACAAAGGAGAAAATCTCAGGAGCCCATTTGGGGAAGTTGGAACAAGCTTCTTTAATATGACTAAACTACCTGTTAAATGCCAGCCATCGGTTGGTTCGGTAGCATACTCCCAACTAGATACTAGACTAAAAGATATGCAGGAATCTCTTAGTCAGCCATCGTTAAATATAGCTTTGGGGGTTCCATTAGGTACATCAAACTTTGTGGTACCCTTATCAGGAAGTGCAGCTGAAGAGGATGAAAAGAGCATTCTTCCATTTCAACCGGGCCAAAGATCTCGCCCAATTTTTCCTAAGCCCTTAAAAACTGGGACCACAGTTAATTCAGAAACAAGAAAGGGAATGACTCCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGGGGTAAGAACCAACTTCTTCCGAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAAATATCTGGAGATTTGAATTCTACTATTGTTCCTCTATTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTTCCCCCTATCTCTCAATCAGAGGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCAAACAACAACAGCAGAATGTATGTTTTGGAGGGCGTTACCCCTTGCATACAGTCCATGCAATTACAAGCTGGTGATACTGTTACCTTTAGTCGGATAGATCCTGGAGGCCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTTCTGATACACAGGATGCCAAGATCTCTACATTTCCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGGAGATATTAGTTTGCATAAAATCGAAAATTTTGGGGGTAGGATGACTTCAGGACAACAACCCATGTCAACCATGGACAAGAAGACTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTCCGGCCTCCACCAAGTGCAAATCCCACCATTGTCACAATCGATGACCATGAATTTGAGGAGTATGATGAACCTCCAGTTTTTGGCAAGAGAACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAAGTTGCCTGTGGATGTTCTTCTTCCTCCAAAGTGGACTTGTTCAGATAATATTTGGGATTTGAGCAGGCGTACATGTTCTGCACCGGAAGAGATGAACACAAAGGAACAGGAGAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTGCTCAAGAACTCGAGCCTTCTGGTTTGGATGCACTGGCTAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACGTGCAGGAATCAGGTACAACAACTAGGCATCCTCGACACCGACAAGGATGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCATAAATCCACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACGCTCATGCTTCGCAAGAAGAAACGCCTATCAGAACGTGAAATGGAGACTTCACTCAAGGAGGGGAATTCACAATTTGATGAATCAGGAACGAGTGGGACACTGAAGGGTACATCTCTGCAAACAAACCATTCAGAGAACGAAAGAAGTCAGATCCGAGTAAAAGATGAGGAGGCTGCAAATAGCAGTGGCCAAATTGACTTGAACTGCCACCCTGACCGGGAAGACATGCAACTGGAGGTAGCAGGATTAAGCATGATGAGTCTTGTTGAGGCTGCCAGCCAACCTTTAGATAGTTACTCAAAGCAAATTGGCGTCTCCAGCGTCACGAGTGAGCAACATTCCAGTCAACCAAGTAGCGCGGAGAGTGAGAGACGCCTGTCTGAGGAAGGGTGCCATGGATCAGCACACGAGAGCACAAGTGATAGATGCAGAGGGCACCATTGA 2688 45.39 MHFMHLLLCMHSLSLSFRHFHAFLLLLCNCHRLPPSLPPRHCMNTSCGAATPHDWTKGWPLGSAGFAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFEYLDYGGIGCTTCVKRSRLDVIRRDEISNGFDAVTVGNVGLLRPASVEDRVVQNGIKEEKLLQLCNIMEANETNHFQQAQRVDRSASPAQNKGENLRSPFGEVGTSFFNMTKLPVKCQPSVGSVAYSQLDTRLKDMQESLSQPSLNIALGVPLGTSNFVVPLSGSAAEEDEKSILPFQPGQRSRPIFPKPLKTGTTVNSETRKGMTPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQISGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPGGQLVMGFRKATNSSDTQDAKISTFPNGSHSGDASFSGVFQNLPLRAGDISLHKIENFGGRMTSGQQPMSTMDKKTRNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRKLPVDVLLPPKWTCSDNIWDLSRRTCSAPEEMNTKEQENLLRASKDFKKRKIMKSQKSAQELEPSGLDALASAAVLGDSMADVQESGTTTRHPRHRQGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRLSEREMETSLKEGNSQFDESGTSGTLKGTSLQTNHSENERSQIRVKDEEAANSSGQIDLNCHPDREDMQLEVAGLSMMSLVEAASQPLDSYSKQIGVSSVTSEQHSSQPSSAESERRLSEEGCHGSAHESTSDRCRGHH 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3853364 3863072 - CmaCh01G007340.1 Cma01g00734 286427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00734 895 MobiDBLite consensus disorder prediction 291 313 - -
Cma01g00734 895 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 40 864 - -
Cma01g00734 895 SMART B3_2 366 466 IPR003340 GO:0003677
Cma01g00734 895 Pfam B3 DNA binding domain 366 465 IPR003340 GO:0003677
Cma01g00734 895 MobiDBLite consensus disorder prediction 191 208 - -
Cma01g00734 895 MobiDBLite consensus disorder prediction 870 895 - -
Cma01g00734 895 Gene3D - 597 650 - -
Cma01g00734 895 ProSiteProfiles B3 DNA-binding domain profile. 366 467 IPR003340 GO:0003677
Cma01g00734 895 SUPERFAMILY DNA-binding pseudobarrel domain 363 467 IPR015300 -
Cma01g00734 895 MobiDBLite consensus disorder prediction 850 895 - -
Cma01g00734 895 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
Cma01g00734 895 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 40 864 - -
Cma01g00734 895 MobiDBLite consensus disorder prediction 191 212 - -
Cma01g00734 895 MobiDBLite consensus disorder prediction 756 820 - -
Cma01g00734 895 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Cma01g00734 895 MobiDBLite consensus disorder prediction 769 794 - -
Cma01g00734 895 CDD B3_DNA 364 465 IPR003340 GO:0003677
Cma01g00734 895 MobiDBLite consensus disorder prediction 850 869 - -
Cma01g00734 895 Gene3D - 344 471 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00734 Cma-Chr1:3853364 Cma06g00191 Cma-Chr6:972527 0 dispersed
Cma01g00734 Cma-Chr1:3853364 Cma07g00273 Cma-Chr7:1214180 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34278 PF02362 B3 2.10E-16 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00734 - - cmo:103497016 1484.16