Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00737 | ATGTGTCGAGCACAGGAGTGGGCTTATGCAGCCCTTCTGCTCCTGTGCTTCTCGTCGTCCGTACTATTGGTCGGTGCAGCAAAGGCGGTTACTCGCCCCTCCGAAGTGGACGCTTTGCTCGAGATCAAGAGAAGTTTGTTGGATCCTAATGGGAATTTGAGCAACTGGAACAGGGGAGACCCTTGCATTTCGAAATGGACTGGTGTTCTGTGCTACAGTTCCACATTGGATGATAACTATCTACATGTTTCTGAATTGCGACTTCTAAATATGAGTTTATCAGGAAATTTATCACCTGCGCTTGGTCGTTTATCTTACCTGAAAGTTTTGGACTTCATGTGGAATGAGATAACTGGGGGAATACCAGGAGAGATAGGCAATATAACGTCCTTAAGACTGTTGCTTCTAAACGGGAACCAGTTGTCAGGTTCATTGCCAGAAAATCTTGGGAATCTTGTACATTTAGACAGGATACAGATTGACCAGAACCATATATCAGGACCAATACCTAAGACATTTGCAAACTTAAAAGAAATAAGGCATTTCCACATGAACAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTGAATTGCCCAGTCTTATCCACATCCTCCTTGACAATAACAACATATCGGGGAAACTTCCACCAGAGTTGTTTCGATTGCTATACTTAGAAATACTACAACTTGACAACAACAACTTCAGCGGGTCCACAATACCAGATTCTTATGGGAATATGACTAACTTGCTGAAATTGAGTCTAAGGAATTGTAGTTTGCAAGGACCAATTCCTAATCTGAGCATGATAAAGAACCTGGGTTATCTGGATCTAAGTAACAATCAACTAAGTGGATTCATACCACGAGACAAGTTCTCTGAGAATATTACTACCATCATTTTATCAGACAATCGTCTTACTGGCACCATACCATCCAGTCTTTCGGATCTACCACTTCTTCAGAAATTGTCAATTGCAAATAATTCATTGAACGGCTCAGTTCCATCCTCCATATGGCAAAACAGGACGCTCAAATTTTTGGACAGCCTTACAGTAGAGCTGCAGAACAATAAATTTTCAAATATTTTTGGAAGCATTGATCTCCCTCTGAACGTCACTGTCTGGCTTCATGGAAATCCTGCTTGTTCTAATAACAGCCTGGTGCACTTCTGTGGATCTGAGCGTGAGGATATAGTTGACATTCCAACAAATAAAAGTCTTAGCTGTTCTGATTCAATATGCCCACCTCCTTATGAATGTTACTCGGCAAAATGTCCCTCATCTTGTGTCTGTTCTGCACCTCTTCTTATTGGATATCGTTTGAAAAGTCCCGGATTCTCACGTTTTAGTCCATATCAAAAAATGTTCGAGGAGTACCTGACCAATGGTCTTAAATTACATCTTGAACAATTGGACATTGGTTCTGCTGTGTGGCAAAAGGGGCCTCGATTAAGAATGAACCTGAAGCTTTTCCCTCTACATGTTGCCGGTAGCAATAGTCCTCCCTTGTTCAATGACAGCGAGGTTGTAAGAATTGTTTCCAAGTTTGCAAGTTGGAACATTTCAGATAGCGACATATTTGGACCGTACGAACTTCTCAACTTGACAATATCCGATGTTTATAAGAATGTATTTATTCCACTACCATCTGATTCTACTATGAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGTGGAGCAACGCTATCTGCAATTATTTTTATTTTTATCGTAAGATTACGTGTGAGGGGCCACCACATCTCAAGAAGGCATCGTCTGTCAAAAACCTCCATACATATTGAGGGCGTAAAGGAGTTTGGTTACCGTGAAATGGCTCTAGCTACAAACAATTTTCACGAGTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATGGCACTGCTGTTGCTATCAAACGTGCACAGGAGGGGTCACTACAGGGTGAAAAGGAGTTCCTAACTGAAATACAATTATTGTCAAGATTACACCACCGAAATCTTGTGGCTTTGATTGGATATTGTGATGAAGAAGACGAACAGATGTTGGTTTATGAGTTCATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTACGTTCTGCAAAACCTTTGAGTTTTGCCACAAGATTAAAAGCTGCCCTGGGTGCAGCTAAGGGAATTCTGTACCTTCACACGGAAGCTGATCCCCCAATATTCCACAGGGATATCAAGTCCAGCAACATATTATTAGACTCCAAATATTTGGCAAAGGTTGCTGATTTCGGACTTTCACGACTTGCACCTCTACCAGATACAGAAGGCGATGTGCCAAATCATGTATCGACGGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTCCTGACTCGTAAATTGACAGATAAGAGTGATGTTTATAGTCTTGGTGTCGTGTTTTTGGAGATTTTAACTGGGCGGCACCCGATCTCACACGGCAAGAACATCGTCAGAGAGGTCGACCGTGCATATCAGTCTGGAAAAGTTTTCTCGATTGTCGATGGTCAACTCGGATCTTATCCCCTGGAATGTGTTGAAAGATTTGTGACTTTGGCTCTGAAATGTTGCCAAAATGAAACAGATGCACGCCCTTCAATGGCAGAAGTCGTTCGAACACTCGAAACTATCTGGCATATGCTGCCCGAGTCTGATACGAAAGTTGCAGAGCCTCCAATGACGAACGTCGTAAAAATGACCAGTCCTCCATCTTCATCATCCTACATGAATAACTATTACACATCAGAAGTCTCTGGCAGCGACCTTCTTAATCTCAGTTTGTATATAGTTTTGCAGACAAGATTGTTATTCAAATACATTAAATCATTGTATCTTCAGAGCATAGTTTTTGGTTTACTATTAGGAAATACTTTTCATGTGGTTCATGCACTTGCTAATCACAGCCCCACCGGCTCACCCCCTTCTTTCTTCTCCTCCTCCTATCTACCTTTCTCCTGCGACCCTACGCTGCCTCGCCAATCCACCATCTTCTGTAGCGGCCCCTCCATCTCTCAGGCACCCTTAGTTCAGGTCCGGGTCAATCTTCGATTAGGAATCATGGCGGATGAAGCTCAGAATGATGTGAACGATCAGGTGGCAGATATTGCACCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTAATTCAGGATCCGGCTGACGAATCTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATGGCTTGGAGCCAACCACATTTTCTGGACTTAAGAAGAAGAAGAAAAAACCAGTAGAGGCCATCTCCTTGAACGACGACGGTCCGGATGCCACAGAGGATTTGGATGATCAATCAGGGGAGAATGAGGATCGAGAGGGAATTGTTCTACAGTATCGTTTTCCTTGGGAGGGAAGTGATCGCGATTATGAGTATGAGGAGCTTCTTGGACGGGTATTTAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGTGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTCGTCAATTTCATGGATCTATGTAAAACGATGCATCGTCAGCCAGACCATGTTATGGCTTTCTTATTGGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTGGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGAAGATATGTCAATGAGTATGTTATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTGTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATCAAAGCCGGTTTTGTTGCTCGTGTTGGCCGTAGGAACGCTGGGACATGA | 3927 | 42.93 | MCRAQEWAYAALLLLCFSSSVLLVGAAKAVTRPSEVDALLEIKRSLLDPNGNLSNWNRGDPCISKWTGVLCYSSTLDDNYLHVSELRLLNMSLSGNLSPALGRLSYLKVLDFMWNEITGGIPGEIGNITSLRLLLLNGNQLSGSLPENLGNLVHLDRIQIDQNHISGPIPKTFANLKEIRHFHMNNNSISGEIPSELSELPSLIHILLDNNNISGKLPPELFRLLYLEILQLDNNNFSGSTIPDSYGNMTNLLKLSLRNCSLQGPIPNLSMIKNLGYLDLSNNQLSGFIPRDKFSENITTIILSDNRLTGTIPSSLSDLPLLQKLSIANNSLNGSVPSSIWQNRTLKFLDSLTVELQNNKFSNIFGSIDLPLNVTVWLHGNPACSNNSLVHFCGSEREDIVDIPTNKSLSCSDSICPPPYECYSAKCPSSCVCSAPLLIGYRLKSPGFSRFSPYQKMFEEYLTNGLKLHLEQLDIGSAVWQKGPRLRMNLKLFPLHVAGSNSPPLFNDSEVVRIVSKFASWNISDSDIFGPYELLNLTISDVYKNVFIPLPSDSTMSKGALAGIILGAIAGGATLSAIIFIFIVRLRVRGHHISRRHRLSKTSIHIEGVKEFGYREMALATNNFHESTVVGQGGYGKVYKGILADGTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEDEQMLVYEFMSNGTLRDHLSVRSAKPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYLAKVADFGLSRLAPLPDTEGDVPNHVSTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEILTGRHPISHGKNIVREVDRAYQSGKVFSIVDGQLGSYPLECVERFVTLALKCCQNETDARPSMAEVVRTLETIWHMLPESDTKVAEPPMTNVVKMTSPPSSSSYMNNYYTSEVSGSDLLNLSLYIVLQTRLLFKYIKSLYLQSIVFGLLLGNTFHVVHALANHSPTGSPPSFFSSSYLPFSCDPTLPRQSTIFCSGPSISQAPLVQVRVNLRLGIMADEAQNDVNDQVADIAPFDPTKKKKKKKVVIQDPADESVDKLAEKTESLSVSDGLEPTTFSGLKKKKKKPVEAISLNDDGPDATEDLDDQSGENEDREGIVLQYRFPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT | 1308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3882381 | 3910503 | - | CmaCh01G007370.1 | Cma01g00737 | 286430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00737 | 1308 | Pfam | Protein kinase domain | 624 | 891 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00737 | 1308 | SMART | serkin_6 | 624 | 898 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00737 | 1308 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 1153 | 1260 | IPR016189 | GO:0003743|GO:0006413 | |
Cma01g00737 | 1308 | Gene3D | Phosphorylase Kinase; domain 1 | 595 | 699 | - | - | |
Cma01g00737 | 1308 | MobiDBLite | consensus disorder prediction | 1118 | 1132 | - | - | |
Cma01g00737 | 1308 | Gene3D | Transferase(Phosphotransferase) domain 1 | 700 | 910 | - | - | |
Cma01g00737 | 1308 | Gene3D | - | 1151 | 1293 | - | - | |
Cma01g00737 | 1308 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 15 | 931 | - | - | |
Cma01g00737 | 1308 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 1257 | 1292 | IPR016190 | GO:0003743|GO:0006413 | |
Cma01g00737 | 1308 | ProSitePatterns | Protein kinases ATP-binding region signature. | 630 | 652 | IPR017441 | GO:0005524 | |
Cma01g00737 | 1308 | CDD | STKc_IRAK | 630 | 896 | - | - | |
Cma01g00737 | 1308 | Pfam | Leucine rich repeat N-terminal domain | 33 | 71 | IPR013210 | - | |
Cma01g00737 | 1308 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 744 | 756 | IPR008271 | GO:0004672|GO:0006468 | |
Cma01g00737 | 1308 | SMART | eIF2Bneu4 | 1178 | 1287 | IPR002735 | GO:0003743|GO:0006413 | |
Cma01g00737 | 1308 | Pfam | Leucine rich repeat | 154 | 213 | IPR001611 | GO:0005515 | |
Cma01g00737 | 1308 | Pfam | Domain found in IF2B/IF5 | 1178 | 1286 | IPR002735 | GO:0003743|GO:0006413 | |
Cma01g00737 | 1308 | MobiDBLite | consensus disorder prediction | 1099 | 1114 | - | - | |
Cma01g00737 | 1308 | MobiDBLite | consensus disorder prediction | 1079 | 1135 | - | - | |
Cma01g00737 | 1308 | SUPERFAMILY | Protein kinase-like (PK-like) | 610 | 932 | IPR011009 | - | |
Cma01g00737 | 1308 | ProSiteProfiles | Protein kinase domain profile. | 624 | 896 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00737 | 1308 | SMART | LRR_typ_2 | 200 | 224 | IPR003591 | - | |
Cma01g00737 | 1308 | SMART | LRR_typ_2 | 272 | 296 | IPR003591 | - | |
Cma01g00737 | 1308 | SMART | LRR_typ_2 | 319 | 343 | IPR003591 | - | |
Cma01g00737 | 1308 | SMART | LRR_typ_2 | 128 | 152 | IPR003591 | - | |
Cma01g00737 | 1308 | SUPERFAMILY | L domain-like | 48 | 410 | - | - | |
Cma01g00737 | 1308 | Gene3D | Ribonuclease Inhibitor | 31 | 294 | IPR032675 | - | |
Cma01g00737 | 1308 | Gene3D | Ribonuclease Inhibitor | 295 | 385 | IPR032675 | - | |
Cma01g00737 | 1308 | PANTHER | LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN | 15 | 931 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00737 | Cma13g00010 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00737 | Cma-Chr1:3882381 | Cma03g00280 | Cma-Chr3:3750096 | 0 | dispersed | |
Cma04g00487 | Cma-Chr4:2482425 | Cma01g00737 | Cma-Chr1:3882381 | 6.84E-74 | dispersed | |
Cma05g00482 | Cma-Chr5:2273133 | Cma01g00737 | Cma-Chr1:3882381 | 1.57E-07 | dispersed | |
Cma12g00141 | Cma-Chr12:614875 | Cma01g00737 | Cma-Chr1:3882381 | 4.86E-07 | dispersed | |
Cma13g00010 | Cma-Chr13:194995 | Cma01g00737 | Cma-Chr1:3882381 | 1.18E-156 | transposed | |
Cma01g00737 | Cma-Chr1:3882381 | Cma13g00009 | Cma-Chr13:181558 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68262 | PF00069 | Pkinase | 1.80E-47 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00737 | - | - | csv:101208136 | 1503.8 |