Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00744 ATGCAGCCTCCCCACCTTCTGCTTCACCTTCTGCTCTGCCTTTTGCCCTCCCTTTGCCTCATTCCCGCCGTCAAACCAGATCTCACCTCCGACAAGGCTTCTCTTCTCGCTCTCCGTTCTTCCCTCGCCGGCCGAACCATCGAGCTCTGGAATGCAAGCCACCAAACCCCCTGTTCCTGGACTGGCGTCAAATGCCAGGGCAGCCGGGTCACTGTTCTTCGTTTGCCCGGTGCTTCCCTCTCCGGCCAAATTCCGGCCGGCATTTTCAGAAATTTGACCCATCTTCGCACTTTGAGTCTCCGACTCAACGCATTGACGGGTCAGCTTCCGTCAGATCTTGCAGCATGCACTAATCTCCGCAGCCTCTACTTGCAGGGTAATGCATTTTCTGGCCCAATTCCTGAGTTTTTGTTCCAATTTCATGACCTTGTTCGTCTTAACTTGGCTTCCAATAACTTCTCCGGCGTCCTGTCTCCCGGTTTCGACAAACTCCGGCGGCTGAAGACTCTGTTTCTTGAGAACAATCGCCTTATTGGCTCATTACCGGAGCTGAAGCTGCCTAACCTCGAACAGTTCAATGTTTCCAACAATTTCTTTAATGGGTCGGTTCCTCGTCGTTTCCAGTCGTTTCCCTTTACTGCTTTTATGGGTAATCCACTTTGTGGGCGACCCTTTGAGAATTGCTCTCGGAATGTCATTGTTCCATTGACAGTGGATATTGATGTTAATGAGAACAAGAGAAGGAAGAACAACTTGTCTGGGGCTGCAGTCGGTGGGATTGTGATGGGGTCTGTTCTGGGTTTGGTTTTGTTTTGTGTGATTTTGATGGTTTCTTGTCGGAGGCAGAGCGGTCGGAAAACAAGTACTCTGGACATGACAGCCCTTGTCGATGTACGAGGAGAGAAGGCAATTGGTGAAGAGAATGGGGGGTATGAAAATGGGTGCTCTGTGGCTGCTACGGCGGCGCTAGAGAATAAGAAAGGGGAAGGGGATGACAACGTTGGTGGTGCTAAAAAGTTGGTGTTTTTTGGGAATGCTGGGAGGGTGTTTGATTTGGAGGATCTGTTGAGGGCTTCAGCTGAAGTGTTGGGTAAGGGAACGTTTGGGACAGCTTATAAAGCTGTGTTGGAGATTGGGGCTGTTGTGGCTGTGAAGAGATTGAAGGATGTGGGTGTTTGTGAGAGGGAATTTAGGGAGAAAATTGAAGGTGTGGGAGTAATGGAACATGAGAATTTGGTTGCTCTTAAAGCTTATTATTATAGTAACAAAGGAACTGGTAGGACACCATTGAACTGGCAAATGAGGCGTGCCATTGCATGTGGAGCAGCCCGTGGCATCAAGTACTTGCATTCTCAAGGCCCAAACGTTTCTCATGGAAACATAAAGTCATCCAACATCTTGCTCGCCAAATCCTACGATGCCCGAGTCTCCGATTTTGGCCTAGCACAACTAGTTGGCCCAGCATCGAGTCCTATCAGAGTGGTGGGGTATCGTGCACCGGAGGTGACAGATTCTCGTAAAGTATCACAAAAGGCAGATGTTTACAGCTTTGGCGTATTGCTGTTCGAGCTTTTGACAGGAAAGGCTCCAAGTCATGCAGTGTTAAACGAGGAAGGGGTGGATCTACCGAGATGGGTGCAGTCAGTGTTGCAAGAGGAGTGGAGGTCGGAAGTCTTCGATGCCGAACTGCTGAGGTACGAGAGCGTTGAGGAGGAGATGGTTCAAATGTTGGAGCTGGCTGTGGACTGTGTGGCGCAGCATCCTGATAGACGGCCTTCAATGTATGAAGTGAGTAGCCGCATTGAGGAGTTGTGCAGGCCTTCCGTCCATTCGAATCCCCAGCAACACAACGTTGGTGCTGCTGACAAGCCCTTTGGTGCGTCCACCTCCCATATTCAGAATGCCAAATCCATTTGA 1917 49.97 MQPPHLLLHLLLCLLPSLCLIPAVKPDLTSDKASLLALRSSLAGRTIELWNASHQTPCSWTGVKCQGSRVTVLRLPGASLSGQIPAGIFRNLTHLRTLSLRLNALTGQLPSDLAACTNLRSLYLQGNAFSGPIPEFLFQFHDLVRLNLASNNFSGVLSPGFDKLRRLKTLFLENNRLIGSLPELKLPNLEQFNVSNNFFNGSVPRRFQSFPFTAFMGNPLCGRPFENCSRNVIVPLTVDIDVNENKRRKNNLSGAAVGGIVMGSVLGLVLFCVILMVSCRRQSGRKTSTLDMTALVDVRGEKAIGEENGGYENGCSVAATAALENKKGEGDDNVGGAKKLVFFGNAGRVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGAVVAVKRLKDVGVCEREFREKIEGVGVMEHENLVALKAYYYSNKGTGRTPLNWQMRRAIACGAARGIKYLHSQGPNVSHGNIKSSNILLAKSYDARVSDFGLAQLVGPASSPIRVVGYRAPEVTDSRKVSQKADVYSFGVLLFELLTGKAPSHAVLNEEGVDLPRWVQSVLQEEWRSEVFDAELLRYESVEEEMVQMLELAVDCVAQHPDRRPSMYEVSSRIEELCRPSVHSNPQQHNVGAADKPFGASTSHIQNAKSI 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3967055 3970338 + CmaCh01G007440.1 Cma01g00744 286437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00744 638 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Cma01g00744 638 Gene3D Phosphorylase Kinase; domain 1 334 424 - -
Cma01g00744 638 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Cma01g00744 638 MobiDBLite consensus disorder prediction 609 638 - -
Cma01g00744 638 Pfam Leucine rich repeat 73 128 IPR001611 GO:0005515
Cma01g00744 638 PANTHER OS05G0588300 PROTEIN 21 421 - -
Cma01g00744 638 Pfam Protein kinase domain 436 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00744 638 PANTHER INACTIVE RECEPTOR KINASE-RELATED 21 421 - -
Cma01g00744 638 Gene3D Ribonuclease Inhibitor 30 142 IPR032675 -
Cma01g00744 638 SUPERFAMILY Protein kinase-like (PK-like) 361 603 IPR011009 -
Cma01g00744 638 SUPERFAMILY L domain-like 53 210 - -
Cma01g00744 638 ProSiteProfiles Protein kinase domain profile. 357 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00744 638 PANTHER INACTIVE RECEPTOR KINASE-RELATED 422 615 - -
Cma01g00744 638 PANTHER OS05G0588300 PROTEIN 422 615 - -
Cma01g00744 638 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Cma01g00744 638 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00744 Cma-Chr1:3967055 Cma18g00081 Cma-Chr18:358045 0 dispersed
Cma01g00744 Cma-Chr1:3967055 Cma13g00981 Cma-Chr13:7624942 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68263 PF00069 Pkinase 3.60E-24 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00744 - - cmos:111452825 1154.43