Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00745 ATGGTATTCAAAGGCAGGTTTTTCTCCTCCTCCAAGAAGTCTGATTCTTCCAGTCCCGATGGATCCAGTCCCCGATTCCTTGGTTCTAACTCGCCCAGTAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATACCACTACTAGTAGCTTCAAAGGTACTGTTCTGAAAGATTCTACTAGGAGTAAGGATTGGAAACGAAAAGATGGTCAAGTTTTATTGCCGACTGAGACGCCATCGAAGTCCGAGGCAATATCTGGATTGAGCTTAGGGCCGAAGGTTAAGAAGTCGAGCGATGTGAAGGATGTGGCCTCATCGGTTTCGCCTATTCTCGCATCATCCCTTGGATTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGTTTTTTGGGGTTTAAAGGTGATAAGGGCTCATTGGGTTCGAGCAATCTTTCCAGGAACTGTGGCAATGGAAGCTCAGGCTCGAATTCTGGTTCGACATGGTCGGCGTCTTCTAGTGGGGGGAAGAGAGAGGCGGCGAGCCAGAAGAGATTGGGGTTTCAGGACAATTTTAAAAGCTATATTCACAATGCTAGCAATCCCGACAATATGGCAACTGGTAATGCAGCATCTACTGAAAGGAGTCCAAATTTGTTAGGACAGCCTCGGTTGCAGAATGTCGAATCATCCAATGAAGCTGGACGCAATGAATCATCATGGGCATTTTCAGAAGGATCAAGAAACATAGATTTCTGTACGCCTGAGTCTTCTTATGATTGCGAAAATCCAAAAGAGTCTGAATCTCCACGCTTTCAAGCTATACTTCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCGGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGTGTACGACCTTTCCCACTCTGGAAGTCACGTCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGGAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGATTTGGCCATTTTTGCTGCTGATCTGGTTGGAATTCTTGAAAAAAATGTTGATACTCATCCAGAGTGGCAAGAGACCATTGAAGACTTATTGGTTTTAGCTCGAAGCTGTGCCATGTCATCTCCTGGTGAATTTTGGCTTCAGTGTGAAGGCATTGTTCAGGAATTGGATGATAGACGTCAAGAACTTCCTCCAGGCATGCTGAAACAACTTCATACTCGAATGCTGTTCATTCTCACTAGATGTACCAGGCTACTACAGTTCCATAAAGAAAGTGGCTTAGCAGAAGATGAAAATGTTTTTCAGCTTCGTCAATCACGAAATCTGCATTCTGCCGATAAACGTATTCCTCCAGCTATGGGAAGGGAAATGAAAAGTTCTAATGCAGCCAAGGCTTCTAAGGCAGCTTCATCCAGGAAATCTTACAGCCAGGAGCAGCATGGCTTGAACTGGAGCAGAGAACACGACATGCTGCCTAGGAATAATGTCTCTGCATCTTCTGATGATACTTCAAAGAAGTTGGAATCTCCTACTGGCAGAGACCGGATGGCTTCTTGGAAAAAATTGCCTTCTCCGGCAGCCAAAAGTGTGAAAGAACCTACTTTGAAGGATAAAGGTGATAATAAGAGTTTTAAATCTTTGAATGTGCCAAAAATCAGGACTGATGTTTCTGAAACTGTTTTTGCTGCTGCAAATGAGCTTCCTCTGCCAAGAGATTCTCATGACCAGCCTACCAAGCACCAACATAAACCTTCTTGGGGTTGGTGTGATCAACCATCTGTATCTGATGAGAGTTCAATCATTTGTCGCATTTGCGAAGAAGACATTCCTACTGCAAATGTGGAAGACCATTCAAGAATTTGTGCAGTTGCTGATCGATGTGATCAAAAGGGTATAAGTGTTAATGAGCGTCTACTCAGAATTGCTGAAACTCTAGAGAAGATGATCGAGTCCTTTTCGCAAAAAGATTCTCAACATGTAGGAAGTCCAGATGTTGCAAAAGTTTCAAATTCTAGTATGACTGAAGAATCTGATATTTCCCCGAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTCGATTGCTTCCATGAAACTGAAAATTCTGTTTTCATGGATGACTTGAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCTGCTGGTAGCATGACTCCTAGATCTCCTTTATTGACACCAAGAACCAGTCCGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACACGATGATCTTACACAGATCAGTGATCTTGCAGATATTGCACGCTGTTCAGCAAATGCACCTCTGGGTGATGATTGCTCGATGCAATATCTGTTGACGTGCCTTGAAGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCACTGACAGTTGAAACTTTTGGCACTCGCATTGAAAAGTTAATACGGGAGAAGTATTTGCAGCTTTGTGAGCTGGTGGGTGATGAAAAGATTGACATAGCGAGCACTGTAATTGATGAAGATACTCCTCTAGATGATGATGTTGTTCGTAGCTTAAGAACAAGTCCCATCCATTCTTCGAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCTATCAGCCGTGGGGCATTTGGCCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTCGCAATTAAGGTTTTGAAGAAAGCTGATATGATTCGAAAAAATGCTGTTGAAAGTATTCTGGCAGAACGTGATATTTTAATATCTGTGCGCAACCCTTTTGTGGTTCGCTTCTTCTACTCCTTTACTTGTCGTGAAAATTTATATCTCGTGATGGAGTATTTGAATGGAGGAGATCTTTACTCCTTGTTGAGAAATTTAGGCTGCTTAGATGAAGAGGTTGCTCGTGTATATATCGCAGAAGTGGTTCTTGCTTTGGAGTATTTGCATTCACTCGGGGTAGTTCATCGTGACTTAAAGCCGGATAATTTATTAATAGCACACGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAAGTTGGTCTTATCAACAGTACTGATGATTTATCTGGACCAGTTGTTAGCGGTATCACTCTTCATGGGTATGATGAGCCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGAAAGAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGTGCCACAGCTGATTGGTGGTCTGTCGGGATCATTTTATTTGAGCTAATTGTTGGAATTCCACCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCGTGGCCTCAAATACCTGAAGAGATGAGCCACGATGCTCAAGATTTAATTGATCGATTATTGACTGAAGATCCTCACCAGCGACTTGGAGCTATAGGCGCACATGAGGTGAAGCAGCATATGTTCTTTAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTACTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGGCTATCCACCCAGTGAACTTGAGGATTCAAGTGATGCTGATAGCTTAAGTGGTAACAGTAGTGTGAGCAATCGTCAAGATGAAGTGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTTGAAGGATGATCCTCCCTATCACGATGCATAA 3813 42.8 MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPSRSDKKKNKSAAKDEPQISNTTTSSFKGTVLKDSTRSKDWKRKDGQVLLPTETPSKSEAISGLSLGPKVKKSSDVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGNGSSGSNSGSTWSASSSGGKREAASQKRLGFQDNFKSYIHNASNPDNMATGNAASTERSPNLLGQPRLQNVESSNEAGRNESSWAFSEGSRNIDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRGKFDKAKEEVNSDLAIFAADLVGILEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCEGIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIPPAMGREMKSSNAAKASKAASSRKSYSQEQHGLNWSREHDMLPRNNVSASSDDTSKKLESPTGRDRMASWKKLPSPAAKSVKEPTLKDKGDNKSFKSLNVPKIRTDVSETVFAAANELPLPRDSHDQPTKHQHKPSWGWCDQPSVSDESSIICRICEEDIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFSQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETENSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSPFDLFLAGKGAYYEHDDLTQISDLADIARCSANAPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVETFGTRIEKLIREKYLQLCELVGDEKIDIASTVIDEDTPLDDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPVVSGITLHGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGAHEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHGYPPSELEDSSDADSLSGNSSVSNRQDEVNLSQLASINYDLLSKGLKDDPPYHDA 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3970817 3991316 - CmaCh01G007450.1 Cma01g00745 286438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00745 1270 ProSiteProfiles Protein kinase domain profile. 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00745 1270 MobiDBLite consensus disorder prediction 495 510 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 9 31 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 64 78 - -
Cma01g00745 1270 Gene3D Phosphorylase Kinase; domain 1 884 1204 - -
Cma01g00745 1270 Coils Coil 640 660 - -
Cma01g00745 1270 SUPERFAMILY Protein kinase-like (PK-like) 883 1219 IPR011009 -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 189 244 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 726 748 - -
Cma01g00745 1270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Cma01g00745 1270 MobiDBLite consensus disorder prediction 573 592 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 1 113 - -
Cma01g00745 1270 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 1236 - -
Cma01g00745 1270 SMART serkin_6 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00745 1270 MobiDBLite consensus disorder prediction 46 63 - -
Cma01g00745 1270 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 25 1236 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 447 551 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 1225 1244 - -
Cma01g00745 1270 CDD STKc_MAST_like 892 1180 - -
Cma01g00745 1270 ProSiteProfiles AGC-kinase C-terminal domain profile. 1176 1246 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma01g00745 1270 MobiDBLite consensus disorder prediction 1214 1244 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 148 181 - -
Cma01g00745 1270 Coils Coil 315 335 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 659 682 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 468 486 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 127 244 - -
Cma01g00745 1270 MobiDBLite consensus disorder prediction 657 692 - -
Cma01g00745 1270 Gene3D Transferase(Phosphotransferase) domain 1 970 1193 - -
Cma01g00745 1270 Pfam Protein kinase domain 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00745 Cma-Chr1:3970817 Cma15g01387 Cma-Chr15:8686996 0 dispersed
Cma10g00161 Cma-Chr10:728494 Cma01g00745 Cma-Chr1:3970817 8.13E-63 dispersed
Cma11g00178 Cma-Chr11:931023 Cma01g00745 Cma-Chr1:3970817 7.54E-68 dispersed
Cma01g00745 Cma-Chr1:3970817 Cma02g01015 Cma-Chr2:6025152 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68264 PF00069 Pkinase 1.40E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00745 - - csv:101214945 2204.48