Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00749 ATGATAGCCAGCGCCACCACTTCATCCGACCCTTTTTCTTCCTTGGAAAATGGCACCAAGAGAAAGCGAAGGCCTGCAGGGACACCAGATCCGGATGCAGAGGTGGTGTCTCTGTCGCCCAAGACGTTGCTCGAATCGGACCGATACGTGTGCGAGATCTGCAACCAGGGGTTCCAGCGGGATCAGAACCTCCAGATGCATAGGCGCCGCCATAAGGTGCCATGGAAGCTGTTGAAGAGGGAGAGTCCTATTGTGAGGAAGAGGGTTTTTGTTTGTCCTGAGCCTACCTGCCTGCACCATGACCCTTGTCATGCGCTTGGTGACCTTGTTGGTATCAAGAAGCACTTCCGACGGAAGCATAGCAACCATAAGCAATGGGTTTGTCAAAAATGCTCCAAGGGCTATGCTGTTCAGTCTGATTATAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGACATCTCCAGCAGCAATCCCAAACCCTCCAGCCGGCTGCATGTTTGTCCCAAACGGCATCGAGTCCAAGCCCATCCAGCGACACCAACATCAGCAGCGCACCCACTTGGGCAGCTCTCATAGCGCCACCCATTTCAAAGCCTCCGGACGCCAACAATAATGGCTCACCACACGATCACAATCTAGACCTCAAACTCTCAACTGGGTCGAATTCGAATCCGCATCCGAATCTTGTAGAGGGAAACAAAGGCTGTTCTTCTATCAAACTCCAGCTCTCGATTGGATCATGCGAGTTCGTGGACGGTGCGAGAGATGTTAGAGACGAAGCTGGGCAGACACTAAGAGTTGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCTCGACAGCAAGCCAAGCGGCAAGTAGAAATGGCGGAGCAAGAATTCGCAAATGCCAAGAGAATGAGACAACAAGCACAAGCGGAGCTCGATAAAGCTATAGCCCTCAAACAAACAGCAATCAAACGGGTCAATTCAACTATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAATTTCAAGCCAAAACAACAACTACAACAACAGCATCGACTACTACTACAACAACGGCATCGTGCCGATCGTGA 1155 51.08 MIASATTSSDPFSSLENGTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPIVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLQQQSQTLQPAACLSQTASSPSPSSDTNISSAPTWAALIAPPISKPPDANNNGSPHDHNLDLKLSTGSNSNPHPNLVEGNKGCSSIKLQLSIGSCEFVDGARDVRDEAGQTLRVAMAEKAYAEEARQQAKRQVEMAEQEFANAKRMRQQAQAELDKAIALKQTAIKRVNSTILEITCQACQKQFQAKTTTTTTASTTTTTTASCRS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4020016 4022237 - CmaCh01G007490.1 Cma01g00749 286442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00749 384 SMART c2h2final6 126 153 IPR013087 -
Cma01g00749 384 SMART c2h2final6 90 120 IPR013087 -
Cma01g00749 384 SMART c2h2final6 49 71 IPR013087 -
Cma01g00749 384 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 381 - -
Cma01g00749 384 MobiDBLite consensus disorder prediction 1 15 - -
Cma01g00749 384 Gene3D Classic Zinc Finger 27 89 - -
Cma01g00749 384 MobiDBLite consensus disorder prediction 225 255 - -
Cma01g00749 384 MobiDBLite consensus disorder prediction 1 36 - -
Cma01g00749 384 SUPERFAMILY beta-beta-alpha zinc fingers 46 72 IPR036236 -
Cma01g00749 384 Coils Coil 290 345 - -
Cma01g00749 384 Gene3D Classic Zinc Finger 111 190 - -
Cma01g00749 384 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Cma01g00749 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
Cma01g00749 384 MobiDBLite consensus disorder prediction 218 255 - -
Cma01g00749 384 PANTHER OS03G0310200 PROTEIN 1 381 IPR039288 GO:0009630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00749 Cma-Chr1:4020016 Cma13g01152 Cma-Chr13:8463470 0 dispersed
Cma11g00032 Cma-Chr11:148110 Cma01g00749 Cma-Chr1:4020016 4.85E-17 dispersed
Cma01g00749 Cma-Chr1:4020016 Cma13g00972 Cma-Chr13:7575429 1.82E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34280 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00749 K25871 - csv:101209426 572.392