Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00749 | ATGATAGCCAGCGCCACCACTTCATCCGACCCTTTTTCTTCCTTGGAAAATGGCACCAAGAGAAAGCGAAGGCCTGCAGGGACACCAGATCCGGATGCAGAGGTGGTGTCTCTGTCGCCCAAGACGTTGCTCGAATCGGACCGATACGTGTGCGAGATCTGCAACCAGGGGTTCCAGCGGGATCAGAACCTCCAGATGCATAGGCGCCGCCATAAGGTGCCATGGAAGCTGTTGAAGAGGGAGAGTCCTATTGTGAGGAAGAGGGTTTTTGTTTGTCCTGAGCCTACCTGCCTGCACCATGACCCTTGTCATGCGCTTGGTGACCTTGTTGGTATCAAGAAGCACTTCCGACGGAAGCATAGCAACCATAAGCAATGGGTTTGTCAAAAATGCTCCAAGGGCTATGCTGTTCAGTCTGATTATAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGACATCTCCAGCAGCAATCCCAAACCCTCCAGCCGGCTGCATGTTTGTCCCAAACGGCATCGAGTCCAAGCCCATCCAGCGACACCAACATCAGCAGCGCACCCACTTGGGCAGCTCTCATAGCGCCACCCATTTCAAAGCCTCCGGACGCCAACAATAATGGCTCACCACACGATCACAATCTAGACCTCAAACTCTCAACTGGGTCGAATTCGAATCCGCATCCGAATCTTGTAGAGGGAAACAAAGGCTGTTCTTCTATCAAACTCCAGCTCTCGATTGGATCATGCGAGTTCGTGGACGGTGCGAGAGATGTTAGAGACGAAGCTGGGCAGACACTAAGAGTTGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCTCGACAGCAAGCCAAGCGGCAAGTAGAAATGGCGGAGCAAGAATTCGCAAATGCCAAGAGAATGAGACAACAAGCACAAGCGGAGCTCGATAAAGCTATAGCCCTCAAACAAACAGCAATCAAACGGGTCAATTCAACTATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAATTTCAAGCCAAAACAACAACTACAACAACAGCATCGACTACTACTACAACAACGGCATCGTGCCGATCGTGA | 1155 | 51.08 | MIASATTSSDPFSSLENGTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPIVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLQQQSQTLQPAACLSQTASSPSPSSDTNISSAPTWAALIAPPISKPPDANNNGSPHDHNLDLKLSTGSNSNPHPNLVEGNKGCSSIKLQLSIGSCEFVDGARDVRDEAGQTLRVAMAEKAYAEEARQQAKRQVEMAEQEFANAKRMRQQAQAELDKAIALKQTAIKRVNSTILEITCQACQKQFQAKTTTTTTASTTTTTTASCRS | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4020016 | 4022237 | - | CmaCh01G007490.1 | Cma01g00749 | 286442 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00749 | 384 | SMART | c2h2final6 | 126 | 153 | IPR013087 | - | |
Cma01g00749 | 384 | SMART | c2h2final6 | 90 | 120 | IPR013087 | - | |
Cma01g00749 | 384 | SMART | c2h2final6 | 49 | 71 | IPR013087 | - | |
Cma01g00749 | 384 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 1 | 381 | - | - | |
Cma01g00749 | 384 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cma01g00749 | 384 | Gene3D | Classic Zinc Finger | 27 | 89 | - | - | |
Cma01g00749 | 384 | MobiDBLite | consensus disorder prediction | 225 | 255 | - | - | |
Cma01g00749 | 384 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cma01g00749 | 384 | SUPERFAMILY | beta-beta-alpha zinc fingers | 46 | 72 | IPR036236 | - | |
Cma01g00749 | 384 | Coils | Coil | 290 | 345 | - | - | |
Cma01g00749 | 384 | Gene3D | Classic Zinc Finger | 111 | 190 | - | - | |
Cma01g00749 | 384 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 51 | 71 | IPR013087 | - | |
Cma01g00749 | 384 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 49 | 71 | IPR013087 | - | |
Cma01g00749 | 384 | MobiDBLite | consensus disorder prediction | 218 | 255 | - | - | |
Cma01g00749 | 384 | PANTHER | OS03G0310200 PROTEIN | 1 | 381 | IPR039288 | GO:0009630 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00749 | Cma-Chr1:4020016 | Cma13g01152 | Cma-Chr13:8463470 | 0 | dispersed | |
Cma11g00032 | Cma-Chr11:148110 | Cma01g00749 | Cma-Chr1:4020016 | 4.85E-17 | dispersed | |
Cma01g00749 | Cma-Chr1:4020016 | Cma13g00972 | Cma-Chr13:7575429 | 1.82E-160 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34280 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00749 | K25871 | - | csv:101209426 | 572.392 |