Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00753 ATGGTTTTGACAACAGTAGCAGACTCCGGCGAATCTGTGAACTGCACTTTTGGTTCCAGATATGTCCGGTCTCCACCGCCGAAGTTCAATCTGGGGGAGAAATCGATACCCAAAGATGCAGCGTACCAGATCATACATGATGAGTTGATGCTTGACGGGATACCCAGGTTGAACTTGGCCTCCTTTGTTACCACATGGATGGAGCCTGAATGTGATAACCTGATCATGGCTTCTCTCAACAAGAACTATGTGGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGATGTGTGAATATGATAGCTCGCCTGTTTCATGCCCCCATTGTAGAAGATGAGGCTGCTGTTGGTGTAGGGACTGTGGGATCATCAGAGGCTATTATGCTGGCGGGTCTTGCTTTCAAGAGGAAATGGCAGAACAAAAGAAGATCTCAAGGCAAGCCCTGTCATAACCCCAACATAGTCACTGGAGCCAATGTGCAGGTGTGTTGGGAGAAGTTTGCTAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTTTTATGTTATGGATCCTATGAAGGCTGTTGAACTTGTGGATGAGAACACCATTTGTGTTGCAGCCATTTTGGGATCCACTTTGACAGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTGCTCTCTAAGAAGAATAAGGAAACAGGTTGGGATACCCCAATTCATGTCGATGCAGCCAGTGGTGGGTTTATAGCTCCGTTCCTTTATCCCGATCTCGAGTGGGATTTTCGGTTGCCTTTAGTGAAGAGTATCAATGTTAGTGGCCATAAGTATGGGCTTGTTTATCCTGGTGTTGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTTCCTGATGAGCTTGTGTTCCATATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAACTTCTCTAAAGGTTCTAGCCAAATCATTGCTCAGTATTATCAGTTCATACGGCTCGGTTTCGAGGGATACAAAAACGTGATGGAGAACTGCAAGGAGAATGCAAGAGTGTTGAAAGAAGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGAATGTTGGAGTACCCCTAGTAGCCTTCACTCTCAAAGACAGCACCAAGCACACCGTGTTCGAGATATCCGAGAACCTAAGGAGGTTTGGATGGATCGTGCCAGCTTACACGATGCCACCAGATGCTCAGCACATCGCCGTGCTACGTGTCGTGATCAGGGAGGACTTCAGCCGGAGTTTGGCAGAGAGACTGATCTCGGACATCAATAAAGTCCTGAAGGAAGTCGATGCGCTGCCGGTTCGGGTGGCTGTGAAAGCAGCTGAAGAAGAAGATGGTGAGAGAATTATAAAGCATGTGAAGAAGAGTGATAAGGAAATTGAAGGAGAAATAGCTGCATATTGGAAGAGGCTTGTGGATGGCAAGAGAACTGGGAGTAAGAATGCAGATTGCCGCCAATCAATCCAACATTCTCAACTCCATCGTCTTCCAGTCGTTCCCATTCCGCAGATTCCTGCAGTGAAGATGGACGAATCCACTCTGAGGCGAAAGGTTCAGAGGAAATCAAAAATCAGAGGTTACAGCATCAAACTAGATGCTCTCGCAGAAATTGTTTCCTTTGCCTCTCGTTTCGATGGCTGCGAAGACGACGCCATAGATTTGGTTCTCGACCATCTTCATGACGAATCCTGTAATGCTATATCTCTTTTTTTCTTTCATACTGTAGGTCATTTCATTCCTTCTCATGGACGATTTCGTCGTTTTCTTGCTACCATGGCAGTGCAATCTTCGATAATAGACAAGGATGCGGTGCATCGGGTTGTCAGTATTCTACTTGCAGCTGATGAAGCGGGAGAAGAATGTCCCGATACCAGTACTAGTACATCGGCACTTTGCATCATAGACGCTTTTGATATCTCCAAGTATCGTTATGATCCCATCAAGAAGATCTTCTACATGCACACAGGAAGCCTTCCAATTCATGGGGATGCTTCTGCTAAAGCTGCTTTGTATAGAGATAGGTTTCTCCTACTTTCTCAGAGGCTCTCCCGAGATCAGCATTTCTCAAAACCCGCTTTTGACAGTGGCATGTCTCATTTTGGAAGCTGTGAGATTTCTCCTATTCAGTCTCTGGTGGGGCAAACTGGGAGGAAATGGGTCATGGGAGTGATCTCTCAGATGGAGGATGGTCACTTTTACTTGGAGGACCTTACTGCGTCTGTGGAAATTAATTTATCTAGTGCTATATCCTTTACAGACCACAAGATAACTACAGGCCTGTTTACAGAGAACACCGTCGTTGTAGCAGAAGGAGAGATGCTCGTGGAGGGCATTTTCAAGGTTATTACATGTGGATTTCCTCCATTAGAGGACAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTTCTCTAACTAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAAAAGAGAGCCATTAACGATATGTTTGTCATACTCTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATTCTTGATGGGTTTGAGAATGTGGAAATCGTTCCTTCCTTATTTGTTTTGATGGGGAATTTTTGTTCCCGTCCATGTAATCTTGCCTTCAATTCTTACTCAAGTCTCAGATTACAATTTGGTAAGCTAGGAAAAATGATAGCCTCTCGTCCACGGTTAAAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACAGTTTTACCCAGGTGTGCTTTGCCAAAGTATTTAACCGAAGAGCTTCAGATGCACGTTCCAAACGCCATCTTCTCAAGTAACCCTTGCAGGGTTAGGTTCTACACCCAAGAAATTGTATTTTTCCGACAGGACCTACTTTACAGAATGCGTCGTTCCTGTCTCATACCACCTTCTACAGAAGAAACAAGTGATCCTTTTGAACATCTTGTTGCTACCATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTATGACCACTGTCTTCATCTTTATCCTACTCCTCATGTGATAGTTCTGGGGGATAGAAGTAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTCAATCCTGGTTCCTTCACCAATGACAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAATTATCTGCCTTGTAA 3261 44.74 MVLTTVADSGESVNCTFGSRYVRSPPPKFNLGEKSIPKDAAYQIIHDELMLDGIPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIVEDEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRRSQGKPCHNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPMKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCKENARVLKEGIEKMGRFEVVSKNVGVPLVAFTLKDSTKHTVFEISENLRRFGWIVPAYTMPPDAQHIAVLRVVIREDFSRSLAERLISDINKVLKEVDALPVRVAVKAAEEEDGERIIKHVKKSDKEIEGEIAAYWKRLVDGKRTGSKNADCRQSIQHSQLHRLPVVPIPQIPAVKMDESTLRRKVQRKSKIRGYSIKLDALAEIVSFASRFDGCEDDAIDLVLDHLHDESCNAISLFFFHTVGHFIPSHGRFRRFLATMAVQSSIIDKDAVHRVVSILLAADEAGEECPDTSTSTSALCIIDAFDISKYRYDPIKKIFYMHTGSLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDSGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSSAISFTDHKITTGLFTENTVVVAEGEMLVEGIFKVITCGFPPLEDRDKSLKLLAGQDFFGGGSLTKEETLRLADLEKRAINDMFVILSDIWLDSEEAMGKLETILDGFENVEIVPSLFVLMGNFCSRPCNLAFNSYSSLRLQFGKLGKMIASRPRLKEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4049515 4059073 - CmaCh01G007530.1 Cma01g00753 286446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00753 1086 Gene3D - 1 64 - -
Cma01g00753 1086 Gene3D - 360 447 - -
Cma01g00753 1086 Gene3D - 853 1082 - -
Cma01g00753 1086 PANTHER GLUTAMATE DECARBOXYLASE 1 493 - -
Cma01g00753 1086 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma01g00753 1086 Gene3D - 65 359 IPR015421 GO:0003824
Cma01g00753 1086 Pfam DNA polymerase alpha/epsilon subunit B 844 1050 IPR007185 GO:0003677|GO:0006260
Cma01g00753 1086 PANTHER GLUTAMATE DECARBOXYLASE 1 493 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma01g00753 1086 SUPERFAMILY PLP-dependent transferases 15 443 IPR015424 -
Cma01g00753 1086 CDD DOPA_deC_like 58 438 - -
Cma01g00753 1086 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00753 Cma-Chr1:4049515 Cma15g00762 Cma-Chr15:3725168 0 dispersed
Cma01g00753 Cma-Chr1:4049515 Cma04g02275 Cma-Chr4:15881579 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00753 K02325 - csv:101207444 935.636