Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00755 ATGGAGTTCGGCACTGGAGGCGGCGCTGGTTGGGACAATGATTCCTCCTCCGACCCACGACGGAGTAGAAAACGCTACCATCGTCACACCGCCAACCAGATTCAGCGGCTCGAAGCAATGTTCAAAGAGTGCCCTCATCCGGATGAGAAGCAGAGATTACAGCTGAGCAGAGAGCTGGGTTTAGCTCCCCGACAGATCAAATTTTGGTTCCAAAACAGGAGGACCCAGATGAAGGCACAACATGAAAGGGCAGATAATAGCGCACTTCGAGCAGAGAACGACAAGATTCGTTGCGAGAACATAGCCATCAGAGAGGCACTCAAGAATGTCATCTGCCCCTCCTGCGGCGGCCCTCCCCTTCACGACGCTTACTTCGATGAACACAAATTAAGAATGGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTGTCTAGCATGGCGGCTAAGTACATTGGGCGGCCAATCTCGCAGCCATCTCATTTTTCTTCATTAGAGCTATCCATGAGTAGTTTTAGCTCCTATGAAATGGGATGTTCTTCTCTTGATCTTGATTTGCTTCCTGTAAGTTCTTCAAGTGTTCTTCCAATTCATCTCTCCAATATGGATAAGACCCTCATGAGTGAAGTTGCTACAAATGCCATGGGAGAGTTGCTAAGGCTTTGTCAAACTAATGAACCATTGTGGATGAAATCACGAAGCGATGGACGGGATGTTCTTGATCTCAAAACGTATGAACAGGCTTTTCCAAGAGCCAATGCGCCGTTGGAGAATCTCCATTTTCGTACCGAAGTGTCTAGAGATTCCGGGGTGGTGATCATGAATAGTGCAACGTTGGTTGATGTGTTTATGGACTCGAACAAATGGAGTGAGTTATTTCTGACGATTGTTTCGAGTGCAAGAACGATTGAAGTTATATCGTCCGGGATGTTGGGAAGTCATCATAATGGCTCCTTGCAACTGATGTACCTAGAATTGCAGCTACTCTCTCCATTGGTTCCGACTCGCCATTTTTACGTTCTTAGATATTGTCAACAAATCGAGCAGGGAATGTGGGCTGTAGTCGATGTTTCGTATAACGTCACCGGAGGAAGCCAAATGGTTTCTCATTCTCAATGTCGTCGCTCTCCCTCGGGCTGCTTGATCCAGGACATGCCTAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAAGGCTCAACTCATTGGCTTTTTAGAGATCTTATTCATAGCGGATTAGCCTTCGGTGCCGAACGGTGGCTCGCAACGCTTCAACGAACGTCCGAAAGATTTGCTTGTTCAATGGTTACTAGTAGTTCGAGTCAGGATCTCGGCGGAGTAATTCCATCATTAGAGGGAAGGAGAAGTATGATGAAACTCGCACGGCGGATGGTGAACAATTTCTGTGCTAGTATCAGCACGTCTCATGGTCACCGTTGGACGACTCTATCTGGGACGGATGAGGTCGGTGTTTGTGTCTCGGTTCATAAAAGTATGGATCCTGGTCAGCGCAACGGTGTGGTTCTCAGTGCAGCTACAACTATATGGCTCCCTGTTCCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGTGGGATGTCCTGTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATCACCAACGGATCCCATCCAGGAAACTGCATATCTGTTCTTAGAGCTTTGAATTCGACACAGAACAACATGTTGATACTCCAAGAGAGTTGCATAGACTCATCTGGATCACTTGTTGTGTACTGCCCTGTGGACTTACCAGCCATGAATCTTGCAATGAGTGGGGAAGATCCATCAAGCATTCCTTTACTACCATCAGGATTCGCGATTCTCCCGGACGGTCGACAGGATCAAGGAGAGGGCGCATCGAGCAGCTCGGACGTGCAGAGGTCAGGTGGGTCGTTGGTGACGGTGGCGTTTCAGATACTCGTAAGTAGCTTGCCATCCGGGAAGCTGAATTTGGAATCAGTGACAACGCTGAGTGCTTTGAATGTGCTGAACCATTATTTACTGCTGCTGCTGCTGCTGCTGTGCCAAGCTGCTGCCATCCCTCCCCCCATTCCTGCCCATTTTACACCCAATATTGTTGTTGTTATTAAATGGTTTTGA 2157 47.52 MEFGTGGGAGWDNDSSSDPRRSRKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLHDAYFDEHKLRMENAHLKEELDRVSSMAAKYIGRPISQPSHFSSLELSMSSFSSYEMGCSSLDLDLLPVSSSSVLPIHLSNMDKTLMSEVATNAMGELLRLCQTNEPLWMKSRSDGRDVLDLKTYEQAFPRANAPLENLHFRTEVSRDSGVVIMNSATLVDVFMDSNKWSELFLTIVSSARTIEVISSGMLGSHHNGSLQLMYLELQLLSPLVPTRHFYVLRYCQQIEQGMWAVVDVSYNVTGGSQMVSHSQCRRSPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRTSERFACSMVTSSSSQDLGGVIPSLEGRRSMMKLARRMVNNFCASISTSHGHRWTTLSGTDEVGVCVSVHKSMDPGQRNGVVLSAATTIWLPVPPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNCISVLRALNSTQNNMLILQESCIDSSGSLVVYCPVDLPAMNLAMSGEDPSSIPLLPSGFAILPDGRQDQGEGASSSSDVQRSGGSLVTVAFQILVSSLPSGKLNLESVTTLSALNVLNHYLLLLLLLLCQAAAIPPPIPAHFTPNIVVVIKWF 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4065459 4071964 - CmaCh01G007550.1 Cma01g00755 286448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00755 718 Pfam START domain 210 434 IPR002913 GO:0008289
Cma01g00755 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 679 IPR042160 -
Cma01g00755 718 Gene3D - 208 435 IPR023393 -
Cma01g00755 718 ProSiteProfiles START domain profile. 200 438 IPR002913 GO:0008289
Cma01g00755 718 Gene3D - 11 96 - -
Cma01g00755 718 CDD homeodomain 23 81 IPR001356 GO:0003677
Cma01g00755 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 6 679 - -
Cma01g00755 718 SUPERFAMILY Bet v1-like 202 436 - -
Cma01g00755 718 SMART START_1 209 435 IPR002913 GO:0008289
Cma01g00755 718 SUPERFAMILY Bet v1-like 457 670 - -
Cma01g00755 718 SMART HOX_1 21 84 IPR001356 GO:0003677
Cma01g00755 718 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Cma01g00755 718 CDD START_ArGLABRA2_like 204 434 - -
Cma01g00755 718 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Cma01g00755 718 MobiDBLite consensus disorder prediction 1 29 - -
Cma01g00755 718 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Cma01g00755 718 SUPERFAMILY Homeodomain-like 10 80 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00755 Cma-Chr1:4065459 Cma14g00866 Cma-Chr14:4462605 0 dispersed
Cma01g00755 Cma-Chr1:4065459 Cma13g01095 Cma-Chr13:8246548 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34282 PF01852 START 5.40E-47 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00755 K09338 - csv:101215660 1121.69