Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00767 | ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGATCAGAGTCTCAGGACGTTGGTGGCCGTGGCTCCCAAGGATTTGCTGAAAGGAGAGACTTTCCACAGCAACATAGTGGCAGTGCATACCAGGGTGGGGGGAGAGGCTGGGCTTCTCAAGGCGGACGTGGTGGTCAAGGTGGTGGTCGTGGCCGAGGGACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGAAGGGGTAGAGGTGGGCAATATCAGCATGGAGGACGCAATAACTATGGTGGTGGTAATCGCGGTGGCATGGGTAGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCATCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGTGGCGAGTTCTTCCTCCCACCCACCTGATACCTCATTGTTAGAACAACAATTTCAGCAGATTTCCATTCAGCAGGAATCTGCTCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTGAGACCAGGAAAGGGTAGCACTGGCACAAGGTGTATTGTCAAGGCTAACCACTTCTTTGCGGAGCTTCCAGATAAAGATCTTCATCAGTATGATGTTACTATTACGCCAGAAGTCACTTCGCATGTCTATAGTCGAGCTGTAATGGAGCAGCTGGTGAAGTTATACAAGGTCTCTCACCTTGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATACACTGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATAACTCTTTTTGACGAGGAAGATGGATCAGGAGGGCAAAGGCGGGAGAAAGAATTTAAAGTCGTAATCAAATTTGCTGCTCGTGCTGATCTGCACCATTTAGGACTCTTTCTTCAAGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTGCTGGATATTGTTTTACGCGAATTACCTACTTCAAGGTATTCCCCTGTGGGTCGATCATTTTACTCTCCAAACCTTGGTAGACGTCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTTATCGACTTTGTGACTCAGCTTCTCAACCGCGATATGTCATCCAGACCATTATCTGATGCTGACCGTGTTAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACGCGGGAGCTAACTTTCCCCGTTGACGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTCTATGAAACGTATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCAATGGAAGTATGTAAGATTGTTGAAGGACAGAGGTATTCCAAACGGCTCAATGAGAGACAGATAACTGCTCTTCTCAAGGTTACATGCCAACGACCACACGATAGAGAGGCAGACATTATGCAGACAGTACGTCATAATGCATATCATAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTCCACCATGGCTAAAATATCATGACACAGGCAGAGAAAAAAATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAACAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGTGTAAATTTCTCTCGCTCTGTGCAAGAGAGTGTCACTAGCAGGTTTTGTTATGAACTGGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCCCGTCCTGATCACGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTATCCGACCCCAGGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTCTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTTAAAATGAGTAAACAATATTTGGCCAACGTGGCCTTAAAAATAAATGTTAAGGTTGGGGGAAGGAATACAGTACTCGTTGATGCATTATCTAGGAACATACCCTTGGTTAGTGACCGGCCGACCATTATATTTGGTGCTGACGTAACCCATCCTCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTGAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACCGGGATGGTGTTAGTGAAGGACAATTCTACCAAGTTTTGTTACATGAGCTGGATGCCATTAGAAAGGCTTGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTCGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAATATATTACCTGGTACGGTTGTCGACTCCAAAATTTGTCATCCTACGGAATTTGACTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTATGGGATGAAAATAAGTTCACAGCTGACGGATTGCAGACTCTAACGAATAACCTTTGTTATACGTGA | 2934 | 45.94 | MGRKKRTEGGGERSESQDVGGRGSQGFAERRDFPQQHSGSAYQGGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGQYQHGGRNNYGGGNRGGMGSGGIGGGPSSGGPSRPSVPELHQATPVYQGGVTQPISSVASSSSHPPDTSLLEQQFQQISIQQESAQSQAIQPAPPSSKSMRFPLRPGKGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSHVYSRAVMEQLVKLYKVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYSPVGRSFYSPNLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDMSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHDREADIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKNCLPQVGQWNMMNKKMFNGGTVNNWMCVNFSRSVQESVTSRFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSIIRPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRNIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYT | 977 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4130153 | 4135883 | - | CmaCh01G007670.1 | Cma01g00767 | 286460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00767 | 977 | MobiDBLite | consensus disorder prediction | 164 | 180 | - | - | |
Cma01g00767 | 977 | MobiDBLite | consensus disorder prediction | 164 | 195 | - | - | |
Cma01g00767 | 977 | Pfam | Glycine-rich region of argonaut | 73 | 180 | IPR024357 | - | |
Cma01g00767 | 977 | Gene3D | - | 573 | 748 | - | - | |
Cma01g00767 | 977 | SMART | DUF1785_2 | 342 | 394 | IPR014811 | - | |
Cma01g00767 | 977 | Pfam | Argonaute linker 2 domain | 535 | 581 | IPR032472 | - | |
Cma01g00767 | 977 | ProSiteProfiles | Piwi domain profile. | 685 | 977 | IPR003165 | GO:0003676 | |
Cma01g00767 | 977 | Gene3D | - | 755 | 977 | IPR036397 | GO:0003676 | |
Cma01g00767 | 977 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 87 | 977 | - | - | |
Cma01g00767 | 977 | CDD | Piwi_ago-like | 553 | 977 | IPR045246 | - | |
Cma01g00767 | 977 | ProSiteProfiles | PAZ domain profile. | 395 | 509 | IPR003100 | GO:0005515 | |
Cma01g00767 | 977 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Cma01g00767 | 977 | Pfam | Mid domain of argonaute | 592 | 666 | IPR032473 | - | |
Cma01g00767 | 977 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cma01g00767 | 977 | SMART | Piwi_a_2 | 685 | 977 | IPR003165 | GO:0003676 | |
Cma01g00767 | 977 | CDD | PAZ_argonaute_like | 394 | 508 | - | - | |
Cma01g00767 | 977 | Gene3D | paz domain | 388 | 513 | - | - | |
Cma01g00767 | 977 | SUPERFAMILY | Ribonuclease H-like | 680 | 976 | IPR012337 | - | |
Cma01g00767 | 977 | PANTHER | PROTEIN ARGONAUTE 1A | 87 | 977 | - | - | |
Cma01g00767 | 977 | SUPERFAMILY | PAZ domain | 202 | 540 | IPR036085 | GO:0005515 | |
Cma01g00767 | 977 | SMART | PAZ_2_a_3 | 399 | 531 | IPR003100 | GO:0005515 | |
Cma01g00767 | 977 | Pfam | PAZ domain | 400 | 524 | IPR003100 | GO:0005515 | |
Cma01g00767 | 977 | Pfam | Argonaute linker 1 domain | 343 | 393 | IPR014811 | - | |
Cma01g00767 | 977 | Pfam | N-terminal domain of argonaute | 199 | 333 | IPR032474 | - | |
Cma01g00767 | 977 | Pfam | Piwi domain | 686 | 977 | IPR003165 | GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00767 | Cma-Chr1:4130153 | Cma14g01755 | Cma-Chr14:12799089 | 0 | dispersed | |
Cma01g00767 | Cma-Chr1:4130153 | Cma13g01111 | Cma-Chr13:8310637 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00767 | K11593 | - | csv:101212130 | 1699.87 |