Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00767 ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGATCAGAGTCTCAGGACGTTGGTGGCCGTGGCTCCCAAGGATTTGCTGAAAGGAGAGACTTTCCACAGCAACATAGTGGCAGTGCATACCAGGGTGGGGGGAGAGGCTGGGCTTCTCAAGGCGGACGTGGTGGTCAAGGTGGTGGTCGTGGCCGAGGGACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGAAGGGGTAGAGGTGGGCAATATCAGCATGGAGGACGCAATAACTATGGTGGTGGTAATCGCGGTGGCATGGGTAGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCATCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGTGGCGAGTTCTTCCTCCCACCCACCTGATACCTCATTGTTAGAACAACAATTTCAGCAGATTTCCATTCAGCAGGAATCTGCTCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTGAGACCAGGAAAGGGTAGCACTGGCACAAGGTGTATTGTCAAGGCTAACCACTTCTTTGCGGAGCTTCCAGATAAAGATCTTCATCAGTATGATGTTACTATTACGCCAGAAGTCACTTCGCATGTCTATAGTCGAGCTGTAATGGAGCAGCTGGTGAAGTTATACAAGGTCTCTCACCTTGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATACACTGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATAACTCTTTTTGACGAGGAAGATGGATCAGGAGGGCAAAGGCGGGAGAAAGAATTTAAAGTCGTAATCAAATTTGCTGCTCGTGCTGATCTGCACCATTTAGGACTCTTTCTTCAAGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTGCTGGATATTGTTTTACGCGAATTACCTACTTCAAGGTATTCCCCTGTGGGTCGATCATTTTACTCTCCAAACCTTGGTAGACGTCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTTATCGACTTTGTGACTCAGCTTCTCAACCGCGATATGTCATCCAGACCATTATCTGATGCTGACCGTGTTAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACGCGGGAGCTAACTTTCCCCGTTGACGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTCTATGAAACGTATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCAATGGAAGTATGTAAGATTGTTGAAGGACAGAGGTATTCCAAACGGCTCAATGAGAGACAGATAACTGCTCTTCTCAAGGTTACATGCCAACGACCACACGATAGAGAGGCAGACATTATGCAGACAGTACGTCATAATGCATATCATAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTCCACCATGGCTAAAATATCATGACACAGGCAGAGAAAAAAATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAACAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGTGTAAATTTCTCTCGCTCTGTGCAAGAGAGTGTCACTAGCAGGTTTTGTTATGAACTGGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCCCGTCCTGATCACGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTATCCGACCCCAGGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTCTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTTAAAATGAGTAAACAATATTTGGCCAACGTGGCCTTAAAAATAAATGTTAAGGTTGGGGGAAGGAATACAGTACTCGTTGATGCATTATCTAGGAACATACCCTTGGTTAGTGACCGGCCGACCATTATATTTGGTGCTGACGTAACCCATCCTCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTGAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACCGGGATGGTGTTAGTGAAGGACAATTCTACCAAGTTTTGTTACATGAGCTGGATGCCATTAGAAAGGCTTGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTCGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAATATATTACCTGGTACGGTTGTCGACTCCAAAATTTGTCATCCTACGGAATTTGACTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTATGGGATGAAAATAAGTTCACAGCTGACGGATTGCAGACTCTAACGAATAACCTTTGTTATACGTGA 2934 45.94 MGRKKRTEGGGERSESQDVGGRGSQGFAERRDFPQQHSGSAYQGGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGQYQHGGRNNYGGGNRGGMGSGGIGGGPSSGGPSRPSVPELHQATPVYQGGVTQPISSVASSSSHPPDTSLLEQQFQQISIQQESAQSQAIQPAPPSSKSMRFPLRPGKGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSHVYSRAVMEQLVKLYKVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYSPVGRSFYSPNLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDMSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHDREADIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKNCLPQVGQWNMMNKKMFNGGTVNNWMCVNFSRSVQESVTSRFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSIIRPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRNIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYT 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4130153 4135883 - CmaCh01G007670.1 Cma01g00767 286460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00767 977 MobiDBLite consensus disorder prediction 164 180 - -
Cma01g00767 977 MobiDBLite consensus disorder prediction 164 195 - -
Cma01g00767 977 Pfam Glycine-rich region of argonaut 73 180 IPR024357 -
Cma01g00767 977 Gene3D - 573 748 - -
Cma01g00767 977 SMART DUF1785_2 342 394 IPR014811 -
Cma01g00767 977 Pfam Argonaute linker 2 domain 535 581 IPR032472 -
Cma01g00767 977 ProSiteProfiles Piwi domain profile. 685 977 IPR003165 GO:0003676
Cma01g00767 977 Gene3D - 755 977 IPR036397 GO:0003676
Cma01g00767 977 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 87 977 - -
Cma01g00767 977 CDD Piwi_ago-like 553 977 IPR045246 -
Cma01g00767 977 ProSiteProfiles PAZ domain profile. 395 509 IPR003100 GO:0005515
Cma01g00767 977 MobiDBLite consensus disorder prediction 1 125 - -
Cma01g00767 977 Pfam Mid domain of argonaute 592 666 IPR032473 -
Cma01g00767 977 MobiDBLite consensus disorder prediction 1 15 - -
Cma01g00767 977 SMART Piwi_a_2 685 977 IPR003165 GO:0003676
Cma01g00767 977 CDD PAZ_argonaute_like 394 508 - -
Cma01g00767 977 Gene3D paz domain 388 513 - -
Cma01g00767 977 SUPERFAMILY Ribonuclease H-like 680 976 IPR012337 -
Cma01g00767 977 PANTHER PROTEIN ARGONAUTE 1A 87 977 - -
Cma01g00767 977 SUPERFAMILY PAZ domain 202 540 IPR036085 GO:0005515
Cma01g00767 977 SMART PAZ_2_a_3 399 531 IPR003100 GO:0005515
Cma01g00767 977 Pfam PAZ domain 400 524 IPR003100 GO:0005515
Cma01g00767 977 Pfam Argonaute linker 1 domain 343 393 IPR014811 -
Cma01g00767 977 Pfam N-terminal domain of argonaute 199 333 IPR032474 -
Cma01g00767 977 Pfam Piwi domain 686 977 IPR003165 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00767 Cma-Chr1:4130153 Cma14g01755 Cma-Chr14:12799089 0 dispersed
Cma01g00767 Cma-Chr1:4130153 Cma13g01111 Cma-Chr13:8310637 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00767 K11593 - csv:101212130 1699.87