Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00769 ATGGCCACTCAGCTCATTATCCTGTCGCTCATTTCCGTGGCACTCCTCGCGGCCGTTCCCCACACCGAAGCCCGCGCCATGAACATGAACGCCATCGACCGATGCTGGCGATCGAACCCATACTGGAGAAAAAACAGGCAAAAGCTCGCCCTTTGTTCAATTGGGTTTGTAGGAAAAATGACCAACAACATCGGAAGAAACCTCGTACACTACCAAGTCACGGACCCCACCGACGACCCACTAACCCCACGCCCAGGCACCCTCAGATACGGCGCCACAATGATCAAACCCAAAGTATGGATCACGTTTCAAAAAGACATGCACATTGTGCTTAACAAGCCGCTTCTTATTAGCAGCTACACGGCCATCGACGGCCGTGGCGCCACCGTCCACATCACGGGGAATGCGTGTCTGATGGTGTCTAGAGCCACCAATGTCATAATCCATGGGCTTATTATCCACCATTGCAAGGCCCAGGCGGCTGGCCGTGTAATGGGACCGGGTTCGAAGATCGTTTCATTGGGACACGTGGACGGTGATGCCATTCGTTTGGTTAGTGCTTCTAAGATTTGGATTGACCATAACACGCTGTATCGGTGTGAGGATGGGCTGATTGATGTCACTAGAGGCTCTACAGATATCACCATTTCTAACAATTGGTTGAGAGATCAAGACAAGGTTATACTTTTGGGTCACGACGATGATTATATTTGGGACCGAAACATGAAGATCATATGGAGCACAGGCAAAGTAGAGAACGCCAAGTGGAATTTCCATTCAGTAAGAGACGTTTTTGAAAACGGCGCTTCCTTCGCACAGATCGGCGCTGGCCGAGGCGGTGTCAAGCCACATTACAATGCCCTGCAGCGCTTCCCAGTGGTAGACGCCAAGTGGTTGCGGTCATTGACAAGCTCTTCCGGCGCCCTGCGCTGCTCACCACGCTCAAGGTGTTGA 954 51.89 MATQLIILSLISVALLAAVPHTEARAMNMNAIDRCWRSNPYWRKNRQKLALCSIGFVGKMTNNIGRNLVHYQVTDPTDDPLTPRPGTLRYGATMIKPKVWITFQKDMHIVLNKPLLISSYTAIDGRGATVHITGNACLMVSRATNVIIHGLIIHHCKAQAAGRVMGPGSKIVSLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLIDVTRGSTDITISNNWLRDQDKVILLGHDDDYIWDRNMKIIWSTGKVENAKWNFHSVRDVFENGASFAQIGAGRGGVKPHYNALQRFPVVDAKWLRSLTSSSGALRCSPRSRC 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4141420 4143407 + CmaCh01G007690.1 Cma01g00769 286462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00769 317 SMART amb_all 106 286 IPR002022 -
Cma01g00769 317 SUPERFAMILY Pectin lyase-like 29 278 IPR011050 -
Cma01g00769 317 Pfam Pectate lyase 117 235 IPR002022 -
Cma01g00769 317 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Cma01g00769 317 PRINTS Pollen allergen Amb family signature 77 102 IPR018082 -
Cma01g00769 317 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Cma01g00769 317 Gene3D - 29 247 IPR012334 -
Cma01g00769 317 PANTHER PECTATE LYASE 18-RELATED 12 244 IPR045032 GO:0030570
Cma01g00769 317 PANTHER PECTATE LYASE 18-RELATED 244 314 IPR045032 GO:0030570
Cma01g00769 317 PANTHER PECTATE LYASE 12 244 - -
Cma01g00769 317 PANTHER PECTATE LYASE 244 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00769 Cma-Chr1:4141420 Cma13g00757 Cma-Chr13:6599653 4.17E-68 dispersed
Cma01g00769 Cma-Chr1:4141420 Cma13g01112 Cma-Chr13:8320215 8.69E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00769 K01728 - csv:101217103 398.282