Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00769 | ATGGCCACTCAGCTCATTATCCTGTCGCTCATTTCCGTGGCACTCCTCGCGGCCGTTCCCCACACCGAAGCCCGCGCCATGAACATGAACGCCATCGACCGATGCTGGCGATCGAACCCATACTGGAGAAAAAACAGGCAAAAGCTCGCCCTTTGTTCAATTGGGTTTGTAGGAAAAATGACCAACAACATCGGAAGAAACCTCGTACACTACCAAGTCACGGACCCCACCGACGACCCACTAACCCCACGCCCAGGCACCCTCAGATACGGCGCCACAATGATCAAACCCAAAGTATGGATCACGTTTCAAAAAGACATGCACATTGTGCTTAACAAGCCGCTTCTTATTAGCAGCTACACGGCCATCGACGGCCGTGGCGCCACCGTCCACATCACGGGGAATGCGTGTCTGATGGTGTCTAGAGCCACCAATGTCATAATCCATGGGCTTATTATCCACCATTGCAAGGCCCAGGCGGCTGGCCGTGTAATGGGACCGGGTTCGAAGATCGTTTCATTGGGACACGTGGACGGTGATGCCATTCGTTTGGTTAGTGCTTCTAAGATTTGGATTGACCATAACACGCTGTATCGGTGTGAGGATGGGCTGATTGATGTCACTAGAGGCTCTACAGATATCACCATTTCTAACAATTGGTTGAGAGATCAAGACAAGGTTATACTTTTGGGTCACGACGATGATTATATTTGGGACCGAAACATGAAGATCATATGGAGCACAGGCAAAGTAGAGAACGCCAAGTGGAATTTCCATTCAGTAAGAGACGTTTTTGAAAACGGCGCTTCCTTCGCACAGATCGGCGCTGGCCGAGGCGGTGTCAAGCCACATTACAATGCCCTGCAGCGCTTCCCAGTGGTAGACGCCAAGTGGTTGCGGTCATTGACAAGCTCTTCCGGCGCCCTGCGCTGCTCACCACGCTCAAGGTGTTGA | 954 | 51.89 | MATQLIILSLISVALLAAVPHTEARAMNMNAIDRCWRSNPYWRKNRQKLALCSIGFVGKMTNNIGRNLVHYQVTDPTDDPLTPRPGTLRYGATMIKPKVWITFQKDMHIVLNKPLLISSYTAIDGRGATVHITGNACLMVSRATNVIIHGLIIHHCKAQAAGRVMGPGSKIVSLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLIDVTRGSTDITISNNWLRDQDKVILLGHDDDYIWDRNMKIIWSTGKVENAKWNFHSVRDVFENGASFAQIGAGRGGVKPHYNALQRFPVVDAKWLRSLTSSSGALRCSPRSRC | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4141420 | 4143407 | + | CmaCh01G007690.1 | Cma01g00769 | 286462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00769 | 317 | SMART | amb_all | 106 | 286 | IPR002022 | - | |
Cma01g00769 | 317 | SUPERFAMILY | Pectin lyase-like | 29 | 278 | IPR011050 | - | |
Cma01g00769 | 317 | Pfam | Pectate lyase | 117 | 235 | IPR002022 | - | |
Cma01g00769 | 317 | PRINTS | Pollen allergen Amb family signature | 178 | 199 | IPR018082 | - | |
Cma01g00769 | 317 | PRINTS | Pollen allergen Amb family signature | 77 | 102 | IPR018082 | - | |
Cma01g00769 | 317 | PRINTS | Pollen allergen Amb family signature | 114 | 130 | IPR018082 | - | |
Cma01g00769 | 317 | Gene3D | - | 29 | 247 | IPR012334 | - | |
Cma01g00769 | 317 | PANTHER | PECTATE LYASE 18-RELATED | 12 | 244 | IPR045032 | GO:0030570 | |
Cma01g00769 | 317 | PANTHER | PECTATE LYASE 18-RELATED | 244 | 314 | IPR045032 | GO:0030570 | |
Cma01g00769 | 317 | PANTHER | PECTATE LYASE | 12 | 244 | - | - | |
Cma01g00769 | 317 | PANTHER | PECTATE LYASE | 244 | 314 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00769 | Cma-Chr1:4141420 | Cma13g00757 | Cma-Chr13:6599653 | 4.17E-68 | dispersed | |
Cma01g00769 | Cma-Chr1:4141420 | Cma13g01112 | Cma-Chr13:8320215 | 8.69E-158 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00769 | K01728 | - | csv:101217103 | 398.282 |