Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00793 ATGGGCGTTGTTGTAGCTCAGCTTTTGTTACTCACCCTTTTTGTTTTATGCTCCTTTGTCCATGGATATCGTGGAACCAATTGGATGAATGGCGCTCATGCTACTTTCTATGGAGGTCCCGACGCCTATGGCACATTGGGTGGGGCTTGTGGATATGGCAATGTATACAGCGAGAACTATGGGATCAAAACGACGGCGTTGAGTACAGCCTTGTACGACAATGGGCTGAGTTGTGGGGCTTGTTTTGAGGTCAAATGTGTGAACGACCCAAAATGGTGCCTTCCCGGCTCCGTCGTAGTCACCGCCACTAACTTCTGTCCTCCGGGCGGTTGGTGCGATCCTTCACTTCGCCATTTCGATCTCTCTCAACCTGCCTTCCAAAGCATCGCTCAAACAATCGCCGGAGTCGTTCCCGTTGCGTATCGAAGGGTTAGATGTGCAAGGAGGGGAGGAATTAAGTTCAGAATAGACGGAAATCCCTACTTCAATTTGGTACTCGTAAGCAATGTGGGAGGCGCAGGGGATGTTCATGCTGTTTTCATTAAAGGGTCTAGGACTGGTTGGAAGGCCATGATCAGAAATTGGGGTCAAAACTGGCAGAGCAACGATTATCTTGTAGGACAATCCCTCTCTTTTAGGGTCATTACCGGTGATGGTCGCTCGGTTGTGTCCTACAATGTTGCCCCTTCTGGCTGGTCTTTTGGACAAACCTTTTACGGCAAACAATTTCTTAGAAGGAAAGCTTTGGATATGAACAAAATCAATGCTTCAGCTGCTGTATTCCGGCCAAGCGCGTCAAGATCGAGGTTCCTTTCGGGGTCGTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTTAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGCTCCCAGGTTTGCCATCCCCAGCTTACCTTGATGGCAGTCTTCCAGGTGACAATGGTTTTGATCCTCTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTTGTGAACGGCCGATGGGCAATGCTTGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTAATGGAATCATCAACGTACCAAAATGGTACGATGCGGGGAAAGCCGAGTATTTTGCATCGTCGTCAACTCTCTTTGTGATCGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGACATAAAGAATCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCGGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAAGCCAAGGAAAAGGAGATTGCTAATGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATCATTCAGCACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCATATATCAGATCCATGGCACAACACTGTTGTCCAAACACTAAGGGGATAG 1500 47.07 MGVVVAQLLLLTLFVLCSFVHGYRGTNWMNGAHATFYGGPDAYGTLGGACGYGNVYSENYGIKTTALSTALYDNGLSCGACFEVKCVNDPKWCLPGSVVVTATNFCPPGGWCDPSLRHFDLSQPAFQSIAQTIAGVVPVAYRRVRCARRGGIKFRIDGNPYFNLVLVSNVGGAGDVHAVFIKGSRTGWKAMIRNWGQNWQSNDYLVGQSLSFRVITGDGRSVVSYNVAPSGWSFGQTFYGKQFLRRKALDMNKINASAAVFRPSASRSRFLSGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSNGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDPWHNTVVQTLRG 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4282436 4285190 - CmaCh01G007930.1 Cma01g00793 286486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00793 499 SMART dpbb_1 64 141 IPR007112 -
Cma01g00793 499 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Cma01g00793 499 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cma01g00793 499 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cma01g00793 499 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cma01g00793 499 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cma01g00793 499 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cma01g00793 499 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Cma01g00793 499 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Cma01g00793 499 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Cma01g00793 499 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Cma01g00793 499 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 255 499 IPR001344 GO:0009765|GO:0016020
Cma01g00793 499 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 255 499 - -
Cma01g00793 499 SUPERFAMILY Barwin-like endoglucanases 11 169 IPR036908 -
Cma01g00793 499 SUPERFAMILY Chlorophyll a-b binding protein 301 497 - -
Cma01g00793 499 Gene3D - 151 243 IPR036749 -
Cma01g00793 499 Gene3D - 21 147 IPR036908 -
Cma01g00793 499 Gene3D Chlorophyll a/b binding protein domain 311 490 - -
Cma01g00793 499 Pfam Chlorophyll A-B binding protein 311 470 IPR022796 -
Cma01g00793 499 Pfam Lytic transglycolase 64 141 IPR009009 -
Cma01g00793 499 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Cma01g00793 499 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00793 Cma-Chr1:4282436 Cma01g00479 Cma-Chr1:2422883 5.21E-112 dispersed
Cma11g00746 Cma-Chr11:3627834 Cma01g00793 Cma-Chr1:4282436 5.29E-59 dispersed
Cma15g00450 Cma-Chr15:2007952 Cma01g00793 Cma-Chr1:4282436 3.84E-43 dispersed
Cma18g00694 Cma-Chr18:6352027 Cma01g00793 Cma-Chr1:4282436 8.04E-72 dispersed
Cma11g00139 Cma-Chr11:750299 Cma01g00793 Cma-Chr1:4282436 6.68E-160 transposed
Cma12g00551 Cma-Chr12:2857173 Cma01g00793 Cma-Chr1:4282436 1.15E-64 transposed
Cma01g00793 Cma-Chr1:4282436 Cma10g00197 Cma-Chr10:888640 0 wgd
Cma01g00793 Cma-Chr1:4282436 Cma11g00138 Cma-Chr11:744009 1.52E-110 wgd
Cma01g00793 Cma-Chr1:4282436 Cma15g00264 Cma-Chr15:1261381 1.65E-120 wgd
Cma01g00793 Cma-Chr1:4282436 Cma04g01668 Cma-Chr4:8389926 5.18E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00793 K08910 - csv:101218675 476.092