Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00798 ATGAACCCTACATTCAATCCATACCCAGATGAAAATTATGCAAAAATTAGGCGATTGATGAGGCAGACTGCGGATCATCACAACACCCTATCGGACAAGGATCCGCACACCGATTTCAACAGCAACCAAGAAACGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTACGGTTGTGGTTTTGTTGATGTTCATTTCTGTGATCTTTTCACTCTCTGTTGTTCTTAGAGATCCGCCATCCGATGCTGTAAATGATGGCTCAAATATGTGGATTCCTCAGTGGAACTCTGACCTAGTGGATTCTAAGGATAGAGATCTTCATACGGCTATACAGCCAGAGGATAAACTGCTAAGTGGCCTTCTTTCTGCCAAACATGGTGTAGGTTCTTGTCTCAGTAGGTACAATTCAGTGTCTTATCAACACAAGCTGGCGTTCGAACCCTCTTCTTACCTGATCGCCAAATTGCGGCGTTATGAAGATCTTCATAAGCATTGCGGAGTTTATACCGAATCTTATAACAAAACTTTGGAGTGGCTTAGGTCTAATGGTAGTAGCAGCTCCTCAGACTGTAGATATCTGATATGGATTTCCTTCAGTGGATTAGGGAATAGAATATTAACTCTTGCTTCAGCGTTCCTTTATTCTCTCCTCACGAATCGTGTCCTACTAGTTGACCCTGGAACCGACATGACTGATCTCTTCTGTGAACCATTTCCTGACGTTTCCTGGTTTCTTCCCCAAGATTTTCCGTTTAAAGAGGAGTTCAGTAACTTCAACCAGACCTCTCCTGATTGCTATGGGAAAATAATGAAGAACAGCATGAGAACAGATTCAAGTGGAGTGATCTTGCCTTCTGTTGTTTATCTTCATTTGGTGCATGATTATGATGATGATGATAAGCTTTTTTTCTGTGATCAAGACCAAGCACTTCTGCAGCAATCACCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATGTCGTCATTCGAGAAAGAACTCAATGATCTTTTCCCGAATAAAGATACCGTTTTCCACTTATTGGGTCGATATCTGTTTCACCCCACGAATTCGGTTTGGGGACTGATTACGAGATATTATCAAGCTTACTTGGCTAGAGCTAGTGAAAGAATAGGTATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGACCTGTACCCTGAAGGAGAATCTGTTGCCACAAACCGATAGGCAGACGAATATCATCGGTTCAGTTAGTAATCCAAAGTCGAAGACCGTGCTGATAACGTCCCTGAGTGCTGGTTACATGGAGAAGTTGAGAGACATTTACTGGGAGAATCCAACGGTGACGGGAGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACTGAGAAGAGTATACATAACCAGAAGGCATTAGCAGAGATGTATTTGTTAAGTACAACTGATGTATTAGTCACCAGCTCATGGTCGACCTTCGGATATGTGGCTCAAGGTCTTGGCGGTCTGAAACCATGGATATTATACAAACCCGAAAACCGTACTGCCCCCGACCCACCTTGTGGTCAAGCCATGTCCATGGAACCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTTGACACTGGTAAACTTGTTCCTCATGTAAAGCATTGTGAGGACATGCCCTGGGGGATTAAGCTGGTTGATCGATATGATTGA 1755 43.08 MNPTFNPYPDENYAKIRRLMRQTADHHNTLSDKDPHTDFNSNQETKCGFSSIRVMGTVVVLLMFISVIFSLSVVLRDPPSDAVNDGSNMWIPQWNSDLVDSKDRDLHTAIQPEDKLLSGLLSAKHGVGSCLSRYNSVSYQHKLAFEPSSYLIAKLRRYEDLHKHCGVYTESYNKTLEWLRSNGSSSSSDCRYLIWISFSGLGNRILTLASAFLYSLLTNRVLLVDPGTDMTDLFCEPFPDVSWFLPQDFPFKEEFSNFNQTSPDCYGKIMKNSMRTDSSGVILPSVVYLHLVHDYDDDDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLMSSFEKELNDLFPNKDTVFHLLGRYLFHPTNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLTCTLKENLLPQTDRQTNIIGSVSNPKSKTVLITSLSAGYMEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCGQAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVKHCEDMPWGIKLVDRYD 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4301842 4304549 - CmaCh01G007980.1 Cma01g00798 286491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00798 584 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 22 582 - -
Cma01g00798 584 Gene3D - 187 242 - -
Cma01g00798 584 PANTHER FUCOSYLTRANSFERASE 2-RELATED 22 582 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma01g00798 584 Gene3D - 367 528 - -
Cma01g00798 584 Pfam Xyloglucan fucosyltransferase 105 553 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00798 Cma-Chr1:4301842 Cma16g00475 Cma-Chr16:2401539 2.76E-172 dispersed
Cma01g00798 Cma-Chr1:4301842 Cma13g01145 Cma-Chr13:8426670 3.13E-158 wgd
Cma01g00798 Cma-Chr1:4301842 Cma04g01674 Cma-Chr4:8413327 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00798 K13681 - csv:101219153 1001.12