Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00801 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGAGGCTGTGGTAGCGGGGTAAAGAGTGGGGGAGATGGGTTTATAGACAGGAGCAAAGTTAGGATTTTGCTGTGCGATAATGATTCCAAAAGTTCAGATGAGGTTTACAAGCTTCTCTTGAAATGTTCCTACCAAGTCATTTCCGTGAGTTCGGCTAGACAGGTCATTGATGCTTTGAATGCGGAAGGACCTGAAATTGATATTATACTCTCGGAAGTTGACCTACCAATGGCCAAGGGTATGAAAATGTTGAAGTACATCACTCGGGATAAAGAGCTGCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATAGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGAACAAATGAGCTATTAAACTTATGGACACACATGTGGCGAAGAAGACGCATGCTTGGACTGGCAGAAAAGAACATCTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACAAATAGTACTACTTTGTTCTCGGATGACACAGATGACAAGTCACGTAGGAGCACAAATCCGGAGATCGGAATTGCAACGCATCAGGAAGATGAGTCTGGTATTGCTTCTGCACTGGTAGAGCTTCCTGCTGTTTATTCTGTGGAACATCAGCCAGATGTACCTGGAATTAGTGAGCGTCGAACAGGGCAACTTTTATCATGCCCTAGAAAGAGTGAACTAAAGATCGGTGAATCATCTGCATTCTTTACCTATGTCAAATCAAGAACTCTGAAAAACAAGGCAGTAGATGAAGAAGGCAATGCCAAACGACTTTTGCTGAATGAAAATCATCAAGAAACTTGTCAGCACCCAGTTCGTCTTCCCCAAATACAAGAAAGTGGGGAGGCCTTGGAAACCCATTCACAAGGAGACGAATTCCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTATGGAAAAATCTTGTACGCCACCTGCTGGCTCAGAAGTTCACAGGGAAGGAAACATCAATGAAGAAAATCGCTCTCAAGTGCATGTGCATCCTCAAAATGGATCTCAACATGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCGTTCTATATGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACCTGCATGATATGCAAAATCGTGCGGCAATGATGTCACAATATGGTCAATTTCATCATTGTCCTCCCAATATAAGTGGTGTGGCATCTTATCCTTACTACCCTATGAATATATGTTTACAACCTGGTCAAATGTCAGCTTCTACTAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCAAAATCGAACAAATTGGATAGAAGAGAGGCTGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGTTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGAGGCCAGTTTGTTCGAAAGGTAAATGGTGTCAATGTAGATCTAAACGGACATCCTGCATCAGCTGATGATGTCGAGGATGAAGATGACGATGAGGAGCAACTATCAAGGGATTCCTCTCATGAAGATGATGTTTCAGGATATTAG 1662 42.36 MDCKELNLNEDCGGCGSGVKSGGDGFIDRSKVRILLCDNDSKSSDEVYKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGIATHQEDESGIASALVELPAVYSVEHQPDVPGISERRTGQLLSCPRKSELKIGESSAFFTYVKSRTLKNKAVDEEGNAKRLLLNENHQETCQHPVRLPQIQESGEALETHSQGDEFPSSTSFPDSFSMEKSCTPPAGSEVHREGNINEENRSQVHVHPQNGSQHDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNRAAMMSQYGQFHHCPPNISGVASYPYYPMNICLQPGQMSASTNTHSWPSFGNSSSNEAKSNKLDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGHPASADDVEDEDDDEEQLSRDSSHEDDVSGY 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4313087 4318201 + CmaCh01G008010.1 Cma01g00801 286494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00801 553 SUPERFAMILY CheY-like 30 158 IPR011006 -
Cma01g00801 553 SMART REC_2 32 147 IPR001789 GO:0000160
Cma01g00801 553 MobiDBLite consensus disorder prediction 516 553 - -
Cma01g00801 553 MobiDBLite consensus disorder prediction 444 466 - -
Cma01g00801 553 MobiDBLite consensus disorder prediction 444 462 - -
Cma01g00801 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 530 - -
Cma01g00801 553 Pfam CCT motif 470 512 IPR010402 GO:0005515
Cma01g00801 553 Gene3D - 32 245 - -
Cma01g00801 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 530 IPR045279 GO:0009736
Cma01g00801 553 MobiDBLite consensus disorder prediction 309 336 - -
Cma01g00801 553 MobiDBLite consensus disorder prediction 309 346 - -
Cma01g00801 553 MobiDBLite consensus disorder prediction 177 205 - -
Cma01g00801 553 MobiDBLite consensus disorder prediction 528 542 - -
Cma01g00801 553 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Cma01g00801 553 ProSiteProfiles CCT domain profile. 470 512 IPR010402 GO:0005515
Cma01g00801 553 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00801 Cma-Chr1:4313087 Cma13g01146 Cma-Chr13:8431403 0 dispersed
Cma01g00801 Cma-Chr1:4313087 Cma11g00131 Cma-Chr11:701417 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34290 PF00072 Response_reg 9.90E-17 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00801 K12127 - csv:101220107 946.036