Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00804 ATGGCGCTGTTTAGAAAATTGTTCTGCCGGAAGCCTCCAGATCGGCTTCTAGAGATGTCGGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCTACGGACCTCTTGGAAGAGGATGAATACAAAGTGTACTTTGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAGAACTTCAGATATATTGTCTCATTATGGTATGACAGTTATGGAGTATCCCCTGCAATATGAAGGGTGTCCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCCTCTGAGAGACAGAAAAATATATTGTTGATGAACTGTGAACAAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTCTTATTGTACCGCAAACAATATGAGGGGGAGCAAAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTTCTTTCTCAGATAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTATGAGAAACCTAGGTTCTGATTGGCCTCCACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGGGACCTTCCGATGCTTGATGGAGGAAAAGGGTGCAGACCTATCATACGCATTTACAGCCAGGACCCATTAACACCACGAAATAAAAGTCCAAAACTTGCTTTTTCTAGTGGAAAGGTGAAAAAACATGGTTGCCAGTATCTACAGGCAGCAAGCGGACTGGTAAAACTGGACGTCCATTGTCATGTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGATGGTGATCTAATACGCGAGGAAGTGATATTTAGAGTCATGTTTCACACGGCGTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATATTATATGGGATGCCAAGGGGCAGTTTCCTAATGATTTTAGAGTAGAGGTACTTTTTTTGGATCCTGATGATGCAGTGCCAAACGTCTCTCCCGTGACGAAAAGTGATGACAAAATTGAAATAGTAAGCAATTCAACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATAGTTGATGTGCAGGAATACGATGTTCAAATGGTACATGCTAATGAAGTAGATGATATTGATCATCAAACAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCTTTTGGAGGGAGTCGAAACTTGGACAAGAAGATCGATTGTAACGTTGAAGCAGTGAAGGACATCACTGTCGATGACGTGACTTTCAAGCGAGATGAAAAAATGGACTCTGGTCTTCATGTAGTGAAGGACATTGTTATGGATTATTCAGATAAAAAGCCAAATCCTCTGCTATTTTCTGTTAACGTACTGAGACGCATGGGAATCAAGGAACTGATAGACGATGCTTACAAGTTGGAAGAGGTTGAGCATCAAGGGTATGGAGAAGATACTGCTATTCCAGACTTTGAATCAAAGGTTCGTGCAAAAAAGTTGGATTCTGATGTGTGGAGGCTTAAATATGAGAAGTTGCAGCCACTAGCATCTAGGAAACAGCCTTCGTCAACAGTTAAGCTAATAAATCATACAACCTTAGCTAAGCAGAAGACCAAACAACCAGAAGATCAGGGCTCTCTTATTCAGGCAAAACCAAAAACTCTTTCTAGATGGACTCCACATGACAAAGAATCTTACATAAACTCCATGCATGTGTTTTATCCATCATCATGGCAGACTGGTGCCTCAGCAACATGTATTAGTTCTCCTACTAGAGATTCTTATTCATATTCAACTTCAAAACCTGCTTCTATTACTTTAGGACTGCTGCTGTCAACTGATACAGCAGATGAACAAAACTGTAACATGGTGAGTCCTAGAAGGCCTTTATGTTGTTCTGCAACAGAGATTCCCACGAGTAAACCGCAATCCCCACTTGGCTCCCCAAAACAATTACCAAATGCTGTTCTGCATCAAGATCCTACTCTACGGTCACCAGCTCTTCATGCTAACACGTCTTTCTTGCATACATCATCTCCTAAATCTTCTTTGCCACCCTCTTCATATATTCACATAAATGCTAGATCTCCACCACCTCCACCTCCACCACCACCACCACTACCTCCTCCACCTTCCTGTCACGTGGCCTCTAAAAGTTCAGCGTTGGTGCGTGGAAATGCACCTAAGCATAGAGCTCCACCAGTACCACCTCCACCTCCTGTACGTAAAGCTCAACCACAATTACCTCCCCCACAGCCACCCCGTTCACCTGGAGCTTTGCTTTCTCCACGCCTATCTAATGCTGGTGCTTTTCCACCACCCCCTCCCCCACCTCCAATTCAGAAAGCTCCTACACATTTAACCCAAGGGCGTCAGGCTTTAAAATCTCCAACAACCTGTGTGGTGTCATCATCATTGCCATCTCCAATTTGTAATGTGCCATCACCTCCTCAACCTACGACAGGTTCCCTTCCACTGGTTCCTTCTCCTTCCAGACCTTCAGGAGGTATGTCTCCACACCCTGGAGCTAAAGGAGTAAATTCTTCAACTGATGTGAAAACATCATCTGTTGTGAGGGGACGTGGGTTCTCACGGTCATTGGGCATGGGGGTGGCTGCTACAGGACCTCAACGATCATCATTAAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATTTGGAGATCCTGAAAGTGCACCAGAATTTGATGTAGCTGAGCTGGAGACACTTTTCTCTGTGACTGTCCCTAAACCTATTGTTGATTCAGGGGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGCGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGAATGCCACTGTCTGACATGATGATCTTTTTGTGCTTGTTCTCGTACTGCATTCTTACTGTTACTGAAATTTCTCACGCAGCAGTACTCTCCATGGATGAATCCATATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAACTAATCAAGGGATACTGTGGTGACAAGGACAAACTCGGAAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCGCGTGTGGAGTCGAAGTTAAGAGTGTTCTCTTTTAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAACTCTTGCAAATTGAAGGAAATATTGAAGAGAATTCTTTGCCTGGGGAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCCATTGGATTCAGATTGGATAGTCTCTCGAAACTCACTGATACACGTGCTACTAACAATAAGATGACTCTCATGCATTATCTCTGTAAGGTTCTCGCTTCGAAGTCACCGTCACTTCTTGATTTTCATCTGGACCTTAGTAGCTTGGAAGCCGCATCTAAGATACAATTGAAGTCTTTGGCGGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAGGCAAGAACTAGTTGCATCTGAAAGCGACGGCCCCATCTCCGAAGCTTTTCGTAAGACATTGAAAGGATTTGTTACTCTTGCCGAGAAGGAGGTGGAATCTGTGACGGTTCTTTACTCGGCGACGGGTAGAAATGCGGATGCACTTACACAATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACTCTCTTCCATTTTACTCGGTCCTTTATGAAAGCACACGCAGAGAATTGCAAGCAGTTGGAAATGGAGATGAGAAGGCTGAGAAAATAA 3915 43.17 MALFRKLFCRKPPDRLLEMSERVYVFDCCFSTDLLEEDEYKVYFASIIPKLQDHFPDASFMVFNFSERKRKTRTSDILSHYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSSERQKNILLMNCEQGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSQINSQPSQMRYLQYISMRNLGSDWPPPDTPLILDCLILRDLPMLDGGKGCRPIIRIYSQDPLTPRNKSPKLAFSSGKVKKHGCQYLQAASGLVKLDVHCHVQGDVVLECIHLDGDLIREEVIFRVMFHTAFVHSNSLKLNRDEVDIIWDAKGQFPNDFRVEVLFLDPDDAVPNVSPVTKSDDKIEIVSNSTEEFFEVEEIFSNIVDVQEYDVQMVHANEVDDIDHQTVWKEDADPPTFQRCKSFGGSRNLDKKIDCNVEAVKDITVDDVTFKRDEKMDSGLHVVKDIVMDYSDKKPNPLLFSVNVLRRMGIKELIDDAYKLEEVEHQGYGEDTAIPDFESKVRAKKLDSDVWRLKYEKLQPLASRKQPSSTVKLINHTTLAKQKTKQPEDQGSLIQAKPKTLSRWTPHDKESYINSMHVFYPSSWQTGASATCISSPTRDSYSYSTSKPASITLGLLLSTDTADEQNCNMVSPRRPLCCSATEIPTSKPQSPLGSPKQLPNAVLHQDPTLRSPALHANTSFLHTSSPKSSLPPSSYIHINARSPPPPPPPPPPLPPPPSCHVASKSSALVRGNAPKHRAPPVPPPPPVRKAQPQLPPPQPPRSPGALLSPRLSNAGAFPPPPPPPPIQKAPTHLTQGRQALKSPTTCVVSSSLPSPICNVPSPPQPTTGSLPLVPSPSRPSGGMSPHPGAKGVNSSTDVKTSSVVRGRGFSRSLGMGVAATGPQRSSLKPLHWSKVTRVLQGSLWEELQRFGDPESAPEFDVAELETLFSVTVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMIFLCLFSYCILTVTEISHAAVLSMDESILDVDQVENLIKFCPTKEEMELIKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFKKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRATNNKMTLMHYLCKVLASKSPSLLDFHLDLSSLEAASKIQLKSLAEEMQAITKGLEKVRQELVASESDGPISEAFRKTLKGFVTLAEKEVESVTVLYSATGRNADALTQYFGEDPARCPFEQVTGTLFHFTRSFMKAHAENCKQLEMEMRRLRK 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4326581 4335466 - CmaCh01G008040.1 Cma01g00804 286497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00804 1304 MobiDBLite consensus disorder prediction 804 828 - -
Cma01g00804 1304 SMART it6_source 890 1303 IPR015425 -
Cma01g00804 1304 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 187 IPR029021 -
Cma01g00804 1304 Gene3D Formin, FH2 domain 891 1295 IPR042201 -
Cma01g00804 1304 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 692 709 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 862 876 - -
Cma01g00804 1304 PANTHER FORMIN-J 739 1301 - -
Cma01g00804 1304 PANTHER FORMIN-J 1 774 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 787 802 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 653 673 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 829 845 - -
Cma01g00804 1304 SUPERFAMILY Formin homology 2 domain (FH2 domain) 718 1303 - -
Cma01g00804 1304 Coils Coil 1191 1211 - -
Cma01g00804 1304 Gene3D - 204 336 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 711 732 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 692 876 - -
Cma01g00804 1304 Gene3D Protein tyrosine phosphatase superfamily 15 203 IPR029021 -
Cma01g00804 1304 Pfam Formin Homology 2 Domain 895 1284 IPR015425 -
Cma01g00804 1304 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cma01g00804 1304 Coils Coil 1285 1304 - -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 655 669 - -
Cma01g00804 1304 ProSiteProfiles Formin homology-2 (FH2) domain profile. 890 1304 IPR015425 -
Cma01g00804 1304 SMART PTEN_C2_2 198 338 IPR014020 -
Cma01g00804 1304 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cma01g00804 1304 MobiDBLite consensus disorder prediction 749 777 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00804 Cma-Chr1:4326581 Cma09g00412 Cma-Chr9:1750408 1.29E-150 dispersed
Cma01g00804 Cma-Chr1:4326581 Cma10g00209 Cma-Chr10:925548 0 wgd
Cma01g00804 Cma-Chr1:4326581 Cma11g00123 Cma-Chr11:655413 0 wgd
Cma01g00804 Cma-Chr1:4326581 Cma13g01093 Cma-Chr13:8230983 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00804 - - bhj:120083459 2025.75