Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00805 ATGGGGTGTGTCAACACGAAGCATGCCGTGTCCGTTACGCCTGCATTCGATCACTCCGGTGTGTTTCGGGACAATGAATCCACGGCGATCGCCAACTCGGGTCGGAGCCGACTTGGGTTTGGGGAGATTGACAAGGGTTCGAAGCCGAAGTCCAAGACGAGGACAAAAGGGTCCAATGACTTCAATGGGGTTGCGAACGAGTTCGGTGAGTCGGGTCGAGCGAGTTCTAATGGCGGTGGGAATGATACTTTGAGCTTCCGAATTGGGAATTTTAATAAGTATATGGAAAGTGAGCAAGTGGCGGCGGGATGGCCTGCTTGGCTCTGCGCCGTCGCCGGTGAAGCCATTCAGGGCTGGGTTCCACTCCGCTCTGATGCCTATGAAAAATTGGAGAAGATTGGACAAGGTACATATAGTACTGTATTCCGAGCACGTGAACTCGAGACAGGAAGGATAGTCGCTTTAAAGAAGGTCCGTTTCGATAATTTCGAGCCCGAAAGTGTTCGGTTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATCACGTCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGATCATGACATTACTGGACTCTTGTCTTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGTTACATGAAACAATTGTTATCTGGGCTCGAGCATTGTCACTCACGCGGTGTAATGCATCGAGATATTAAAGGGTCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGTTTGGCAAACTTCTGTAATTCGGGGCACCGACAACCTCTAACCAGTCGTGTTGTCACGCTATGGTATCGTCCTCCTGAACTTCTACTCGGCTCCACAGACTATAATGCATCTGTGGATCTTTGGAGCGTTGGCTGTGTTTTTGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCACATGCCACTTTGTTCAAACCACAACATCCTTACAATAATTGTTTACGACAGACGTTCAAAGATTATCCTTCGACGACCGTGAACTTGTTAGAAACTCTTCTTTCTGTCGAACCATACAAGCGCGGAGTTGCATCCTCTGCTCTCACATCTGAGTATTTCAGTACAAAACCGCATGCATGTGATCCATCAAGCATGCCAATATATCCACCAAGCAAAGAGATTGATGCAAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGCAGTGGAAGAACCCGTGGATTAGATAGCAGACGGTTAACTCGAAAGCATCTCGGAATCAGTAAATTAGCACCAGCAGAGGACTTATCGGTTTCAGCTCGAGATTTGCATAAGATTAGTATTAATGCTCAAAATCTTAAAGAAGAGAAGGTTATCAAAGGTGGTGAGGTGAAAAAGGTTTCAAATGATAAATTGGAAGAGTCTATGCATGTAAAGAATGCATCCCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCTACATCAAGTGGCTTTGCGTGGGCAAGACGACGAAGAGACGAAGCGTCTATTAGATCGCATTCGAGATCAATTTCACGAGGACACATAATTAATGGGCTGGATCATTCTGCTATATTGCATTCAAGAAGCAATGTGGACTCTAAGTTTCATGAAAAGGGAGACATGTTGTCCATCAGCTGTTCAAGTTCGAAGGGACGTGAATCAAACGAGAGATCCAAGGTTGTGATACGGAATCAGTGGGGGAAGTTTGAGTGTCCCGATTCGTTTGATGCTTCGGATGAGTACTGTTCGCAGGATTTTTCAGTGGCACTCTACTTGCAAGATGAAATGGAAGCTAAGAGGAGTAATCTGAGTTATCAGGATCAAGTGGACAAAGTTGAATACTCTGGGCCCTTGTTATCTCAATCGAGCCGAGTGGATGAACTCCTAGACAGACACGAGAGGCACATCCGACAGACAGTTCGAAGATCGTGGTTCCAAAGAGGTAAAAATTGA 2091 45.29 MGCVNTKHAVSVTPAFDHSGVFRDNESTAIANSGRSRLGFGEIDKGSKPKSKTRTKGSNDFNGVANEFGESGRASSNGGGNDTLSFRIGNFNKYMESEQVAAGWPAWLCAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSTVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPSTTVNLLETLLSVEPYKRGVASSALTSEYFSTKPHACDPSSMPIYPPSKEIDAKQREESRRKKGSGRTRGLDSRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKVIKGGEVKKVSNDKLEESMHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDEASIRSHSRSISRGHIINGLDHSAILHSRSNVDSKFHEKGDMLSISCSSSKGRESNERSKVVIRNQWGKFECPDSFDASDEYCSQDFSVALYLQDEMEAKRSNLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4338905 4342892 - CmaCh01G008050.1 Cma01g00805 286498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00805 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cma01g00805 696 MobiDBLite consensus disorder prediction 56 79 - -
Cma01g00805 696 PANTHER CELL DIVISION PROTEIN KINASE 55 691 - -
Cma01g00805 696 MobiDBLite consensus disorder prediction 413 457 - -
Cma01g00805 696 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00805 696 CDD STKc_CDK9_like 127 411 - -
Cma01g00805 696 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cma01g00805 696 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 55 691 - -
Cma01g00805 696 MobiDBLite consensus disorder prediction 40 79 - -
Cma01g00805 696 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00805 696 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00805 696 MobiDBLite consensus disorder prediction 431 457 - -
Cma01g00805 696 MobiDBLite consensus disorder prediction 41 55 - -
Cma01g00805 696 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Cma01g00805 696 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Cma01g00805 696 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00805 Cma-Chr1:4338905 Cma16g00396 Cma-Chr16:1972196 0 dispersed
Cma01g00805 Cma-Chr1:4338905 Cma13g01092 Cma-Chr13:8224255 0 wgd
Cma01g00805 Cma-Chr1:4338905 Cma15g00248 Cma-Chr15:1187701 0 wgd
Cma01g00805 Cma-Chr1:4338905 Cma04g02787 Cma-Chr4:18688997 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68266 PF00069 Pkinase 7.10E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00805 - - csv:101220347 1246.88