Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00836 ATGCAGAAACTGTTGCGATTAAACCCTTCGTCTTCTTCCTCATCCCCCATTCTCTGTACTGCTGTTAAACCCTTTTCTTCTCTACCTTCCAAGAGCACCTTCTTCAGCCCTAAACCACCGCAGCAGCCTCTTCTTATGTCGGCTGCTACTTCATTTCATAGCGGCGGCACTGGCTCTGCCTTTTCCGCTTCCTCTCTTATCAGAAAACCCTCTTCCGTCGTTGTGTCTTCTCGCTTCGTCGCCGCTAATTCGTCGAGAAATTGCTACTTGTGCCGGTGCGTAATCGAAAACCCTGCCGCATTGCGAGCGTGGGTTGTGTTTAAGGATAATCGAAATGGACTGCGACGGCCGGCGTGGGTGCACACGGATTCTGATGGGTTGTTTTCTTATTCTGGTGTTGAGGAGCTGAAGAGCTCGAGAGTGGCTGTGGCTGGTGATAATGGTGGGGATGGAGATGAAATGGTGTGTGATAATGGTGGAGAAAGTGGGAAGGTTTTGGAGGAAAAAGGGTCTAAGTCGAATAGGAGGCAGAAGAGTTTGTCTGGTGGAAGCGTGTTGGTTGGTGATCCTGATTTGTTGACCATTCCTGGAGTTGGTCCAAGGAATTTGAAGAAGCTAGTGGAGAAGGGGATTGGAGGAGTGGCTGAGCTCAAGCAGTTGTATAAAGATAAGTTCTTTGGTGATTCTAGCCCGAAGATGGTTGAGTTCTTACAGAGTTCTGTTGGAATTATCCACAGAAATCATGCTGAAAGTATAACTGCTTATATAAAAGACAGTGTCGATGAAGAGTTGACAGAGGACAGTTCAAACTCAGATGCAAAGCCATCACAGAAGAAACGGATTACATTCTGTGTCGAGGGAAATATTAGTGTAGGAAAGACGACATTTCTTCAAAGAATAGCTAATGAAACTCTTGAGCTACGTGACCTGGTTGAAGTGGTTCCAGAACCTATTGACAAGTGGCAGGATATAGGACCTGACCACTTCAATATACTAGATGCATTTTATGCCGAGCCTGAAAGATATGCTTATACTTTCCAGAATTATGTGTTTGTCACAAGAGTTATGCAGGAGAGGGAGTCTTCTGGTGGAATCAAGCCACTCAGGTTGATGGAAAGGAGCGTTTTCAGCGACCGAATGGTGTTTGTGAGAGCTGTTCATGAAGCAAATTGGATGAATGAGATGGAGATCAGCATCTATGACTCGTGGTTTGATCCAGTTGTATCAACCTTGCCCGGGTTAATTCCTGATGGTTTCATCTATCTTAGAGCAAGCCCTGATACATGCCACAAAAGAATGAAGCTACGCAAGAGAACTGAGGAAGGTGGGGTCAGTTTAGAGTATCTCCGTGACCTGCACGAGAAGCACGAAAGCTGGCTGTTCCCTTTCCAAAGTGGTAACCATGGGGTTCTATCTGTCAGTAAGCTGCCATTTCATCTAGACAGTTCTTTACACCCTGATATTAGGGATCGTGTCTTTTTCTTGGAGGGTGACCATATGCATAGAAGCATTCAGAAGGTGCCTGCATTGGTTCTTGATTGTGAACCAAACATTGATTTCAGCAAAGACGTTGATGCTAAGAGACAGTATGCTCGTCAAGTTGCCGAATTCTTTGCATTTGTAAAGAAGAAGAACGAAGCGTCTTCGTCAACTGCTGGACAGGACAGCGGAAATGGTTCCCAACCACAAGTAATGCTGCCAAACAAAGGATTATGGGTACCGGGCGGGAATCATTTCCCAGAATCAGCTCTGAAATCATTGGATTTCAGGCGGGCAATCCTAATGTGCAAGTCAAAGAAGGACGTGAAAGAGAATGGATCTAGGAGTAAGAGAATAGGTCGGTCTCAGAGGAAGTTGCAGAGTGAAGAAGAGTATTTGCAGAAGCAAGCTCTTTCGTTGGCTCTTCATCAGCTCCAATTATCTCAGAGGTTCGATGGATCCACTTCGAAGAGAATTGGGTCGACTAGCTCTCGTAGACGCAATCTGTCCGATCCATTCTCTAATGGAAAGCAGAGTCAGAGCAAGAGAGATTCAAAGTTGTGTGGAGCAGCAGATGTGTGTTCAAGTGAAGCAAATCTGCAGGCAGCAGATTTTCTGGAAAATGTGAAGGAAAAGAAATTTGTTTTAGTTCATGGTGAAGGGTTTGGAGCTTGGTGCTGGTACAAAACCATTTCTCTACTAGAGGAATCTGGATTGTCGCCCGTAGCGATTGATCTCAAAGGTTCCGGTATCGATCTAACCGATACAAACGGGGTGAATACTCTAGCAGAGTATTCAAAGCCATTGACTGATTATCTTCAAGATCTTCCTAATGATGAAAAGGTTGTTCTAGTTGGGCACAGTAGTGGAGGTGCTTGTCTTTCGTATGCATCGGAACATTTCTCGAATAAAATAGCAAAAGCAGTTTACGTGTGTGCAACGATGGTGGCTGATGGGCAGAGACCTTTTGATGTATTCATGGAAGAGATTGGATCAAAAGAGATCTTTATGAAAGACTCTAAGAATTTGATGTATGGGAAGGGAAAAGACAAACCTCCTACAGGATTCATGTTTGAGAAAGAACAAATGAAGGGGTTGTACTTTAATCAATCTCCTACAAAGGATGTTGCTTTGGCTATGGTTTCCATGAGACCTTTCCCACTTGGTCCAGTCATGGAGAAGCTCTCACTGTCGCCCCAAAACTATGGACGCGGGCGTCGATTCTTCGTTCAAACGCTCGATGATCGTGCACTCTCACCTGATGTTCAAGAAAGGCTGGTGAGGGAAAACCCACCTGAAAGAGTTTTCAAGATCAAAGGCAGTGATCATTGTCCTTTTTTCTCTAAGCCACAGTCACTGCACAAGATCCTCCTGGAAATCGCTCAAATACCATAA 2874 44.89 MQKLLRLNPSSSSSSPILCTAVKPFSSLPSKSTFFSPKPPQQPLLMSAATSFHSGGTGSAFSASSLIRKPSSVVVSSRFVAANSSRNCYLCRCVIENPAALRAWVVFKDNRNGLRRPAWVHTDSDGLFSYSGVEELKSSRVAVAGDNGGDGDEMVCDNGGESGKVLEEKGSKSNRRQKSLSGGSVLVGDPDLLTIPGVGPRNLKKLVEKGIGGVAELKQLYKDKFFGDSSPKMVEFLQSSVGIIHRNHAESITAYIKDSVDEELTEDSSNSDAKPSQKKRITFCVEGNISVGKTTFLQRIANETLELRDLVEVVPEPIDKWQDIGPDHFNILDAFYAEPERYAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSTLPGLIPDGFIYLRASPDTCHKRMKLRKRTEEGGVSLEYLRDLHEKHESWLFPFQSGNHGVLSVSKLPFHLDSSLHPDIRDRVFFLEGDHMHRSIQKVPALVLDCEPNIDFSKDVDAKRQYARQVAEFFAFVKKKNEASSSTAGQDSGNGSQPQVMLPNKGLWVPGGNHFPESALKSLDFRRAILMCKSKKDVKENGSRSKRIGRSQRKLQSEEEYLQKQALSLALHQLQLSQRFDGSTSKRIGSTSSRRRNLSDPFSNGKQSQSKRDSKLCGAADVCSSEANLQAADFLENVKEKKFVLVHGEGFGAWCWYKTISLLEESGLSPVAIDLKGSGIDLTDTNGVNTLAEYSKPLTDYLQDLPNDEKVVLVGHSSGGACLSYASEHFSNKIAKAVYVCATMVADGQRPFDVFMEEIGSKEIFMKDSKNLMYGKGKDKPPTGFMFEKEQMKGLYFNQSPTKDVALAMVSMRPFPLGPVMEKLSLSPQNYGRGRRFFVQTLDDRALSPDVQERLVRENPPERVFKIKGSDHCPFFSKPQSLHKILLEIAQIP 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4565483 4572993 + CmaCh01G008360.1 Cma01g00836 286529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00836 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 544 IPR027417 -
Cma01g00836 957 MobiDBLite consensus disorder prediction 548 569 - -
Cma01g00836 957 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 131 591 - -
Cma01g00836 957 Pfam Deoxynucleoside kinase 283 537 IPR031314 -
Cma01g00836 957 Gene3D alpha/beta hydrolase 699 955 IPR029058 -
Cma01g00836 957 Pfam Alpha/beta hydrolase family 707 944 IPR000073 -
Cma01g00836 957 Gene3D - 281 539 IPR027417 -
Cma01g00836 957 CDD dNK 283 471 IPR031314 -
Cma01g00836 957 SUPERFAMILY alpha/beta-Hydrolases 707 953 IPR029058 -
Cma01g00836 957 MobiDBLite consensus disorder prediction 145 183 - -
Cma01g00836 957 PANTHER DEOXYNUCLEOSIDE KINASE 131 591 - -
Cma01g00836 957 MobiDBLite consensus disorder prediction 646 677 - -
Cma01g00836 957 MobiDBLite consensus disorder prediction 548 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00836 - - - cmax:111471981 1126.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00414 Cma-Chr1:2093654 Cma01g00836 Cma-Chr1:4565483 9.26E-97 dispersed
Cma01g00836 Cma-Chr1:4565483 Cma02g00433 Cma-Chr2:2189995 9.86E-47 dispersed
Cma01g00836 Cma-Chr1:4565483 Cma15g00230 Cma-Chr15:1136023 5.80E-94 wgd
Cma01g00836 Cma-Chr1:4565483 Cma04g02804 Cma-Chr4:18779586 2.99E-31 wgd
Cma01g00836 Cma-Chr1:4565483 Cma09g01229 Cma-Chr9:8204069 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1636 . . . . . . . . . . Cma01g00836 . Car01g00775 . . Cpe06g01012 . . . . . . . . Cla08g00040 Cam08g0039 Cec08g0213 Cco08g0092 Clacu08g0055 Cmu08g0053 Cre08g0043 . . . . . . . Cme09g00023 . . . . . . . . Sed06g0856 Cmo01g00876 Cmo09g01322 . . . Car09g01152 . Cpe02g01023 Bhi06g00240 Tan10g2040 Cmetu09g0728 . Hepe02g3268 . Lcy10g2140 . . . . . . . Lsi08g00030 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012551 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00836 Cma_Chr01 FPKM 12.194642 12.596364 10.924835 11.50158 43.557693 40.752193 43.042591 12.540462 12.77529 13.577321