Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00837 ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGCCAGGTCACCTTCTGCAAGAGAAGAAATGGACTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAGGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGTATCAAAACAACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCCACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCAGCAAAGCTGCGCCAACAAATCCAAATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACCGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTATCTGCAGAAACGGGAGATCGAACTCGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTGGAGCTGTCACTTTCTCGCACCAAGACTAGAGCTACTTGCTTCATCTCAGATGATGATGATGGTGATTTCCCGATGTTTTGGAGACTTCAATGATGGGACAGATATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCAGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTGGTGTTACTTTCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATAGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATACGCACCTTCACAGCGTGTTCCGAGGTCATCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTGCTGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGGATCATCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTGGGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTCTGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAA 2208 44.52 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQANMEWSCHFLAPRLELLASSQMMMMVISRCFGDFNDGTDMKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGS 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4573034 4583901 - CmaCh01G008370.1 Cma01g00837 286530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00837 735 SUPERFAMILY RNA-binding domain, RBD 230 319 IPR035979 GO:0003676
Cma01g00837 735 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 223 734 - -
Cma01g00837 735 MobiDBLite consensus disorder prediction 410 449 - -
Cma01g00837 735 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Cma01g00837 735 MobiDBLite consensus disorder prediction 654 668 - -
Cma01g00837 735 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cma01g00837 735 MobiDBLite consensus disorder prediction 534 581 - -
Cma01g00837 735 MobiDBLite consensus disorder prediction 633 651 - -
Cma01g00837 735 Pfam Smg-4/UPF3 family 228 390 IPR005120 -
Cma01g00837 735 Gene3D - 221 319 IPR012677 -
Cma01g00837 735 CDD RRM_like_Smg4_UPF3 231 316 - -
Cma01g00837 735 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 MobiDBLite consensus disorder prediction 534 735 - -
Cma01g00837 735 MobiDBLite consensus disorder prediction 451 466 - -
Cma01g00837 735 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 MobiDBLite consensus disorder prediction 390 468 - -
Cma01g00837 735 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma01g00837 735 MobiDBLite consensus disorder prediction 586 625 - -
Cma01g00837 735 MobiDBLite consensus disorder prediction 499 519 - -
Cma01g00837 735 Pfam K-box region 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00837 735 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g00837 735 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma01g00837 735 MobiDBLite consensus disorder prediction 669 687 - -
Cma01g00837 735 Coils Coil 128 167 - -
Cma01g00837 735 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 223 734 IPR039722 GO:0000184
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00837 Cma-Chr1:4573034 Cma07g00152 Cma-Chr7:778548 1.28E-81 dispersed
Cma16g00680 Cma-Chr16:3539095 Cma01g00837 Cma-Chr1:4573034 4.41E-23 transposed
Cma01g00837 Cma-Chr1:4573034 Cma09g01231 Cma-Chr9:8208182 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34294 PF03467 Smg4_UPF3 6.30E-50 CL0221 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00837 K14328 - csv:101208317 894.034