Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00843 ATGGGCTGCATTTGCTCAAGAGATTCCTCAGAACCAGAAGATAGCAGTCAGAAAGAGTCTACAACGGGAAAAGATGTGAACAAATCATCAGTTCAATTGGTTGCTCCTTCTCCCTCTAAAGGAGAGGATTTGTTGTCAGAGATTAAGTTGTCAAGGCAGGCATCTAAAGCAAATGGAGGTTCTGTTCATAAAACAAAGGCCAATGGAGGTTCTGTTCATAAAACAAAGGCCAATGGAGGGTCTGTCCATCGAGCAAGGGAGGACGATGAATCCATTAAGCCTGCAAAAGCAAAAGCAGATAATAGTTTGGCAGCTGGAAGAAAGCCCGACATTTTTAGGTTAGCTAGCTTGTCTAAAGTTGCAGAAGCTGAATATGTGATGGCTGGATGGCCTTCATGGCTAGCTTCTGTTGCTGGAGAAGCCATTAAAGGGTGGGTTCCCCGCCGGATTGACTCCTTTGAGAAGTTAGAAAAAATTGGACAAGGAACTTACAGCAGTGTATATAAAGCCCGAGACCTTGAAACTGGAAAAACCGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCGAGAAAGTGTCCGTTTTATGGCCAGGGAAATCTATATTTTGCGTAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTTTAGTTACTTCCAAAATGTCGGGTAGCTTGCACCTTGTTTTCGAGTACATGGACCATGACCTTGCAGGCCTTGCTGCAGCTCCTGGACATAAGTTTTCTGAGACTCAGATTAAATGTTATGTGCAACAATTGATGCAAGGACTCGAACACTGTCATAGTCGAGGAATTCTGCACCGAGATATCAAAGGTTCAAATCTTCTCATTGACGATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTAGCTACCTGTTTTCAACCTGATCAAAAGCAGCCATTGACGAGTCGGGTGGTGACATTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACTGAATATGGACCCGCCATAGATCTCTGGAGCTGTGGCTGTATCGTTGCTGAACTATTTGCTGGAAAGCCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCGTCTGAGGAGTTCTGGGGGAGAACAAAGTTGCCACTTTCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCATTTCTGAAACATTCAAAAGTTTCCCTCCTCCAGCTCTGGCTCTTGTTAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCCGCTGCCGAAGCTCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCTTCAAGCTTACCAAAATATCCTCCAAGCAAGGAATTCGATGCCAAGCTCCGGAATGAAGAAGAAAGAAAGAGAAAAGCAGAAGCTGTGAAGGGACATCATCCCGAATCAGTAAGAAGGGGCTTGAGAGACACCAAGGCTGCTCCGACTCCCGAGTTCAACACTCAAGGAGACTTTACGATTAAGGTACACCCGATTGCTAAAAAGATGAGTATGAAATACAACCCTCAAGAGGACGGTGAGCCTCCTAGAGTTGCTCAGAGTCGGTACACCCACTCAACATCTATGGTGCACCCGACTATTGCAAGTTCATGGTGTAAGCCCACCGGGGCATCAAGAAATTGTGCAGATTTGAGGACACAGAAATCTCAGATGCATCAGACAGTGGGCGATTCGGCAACCTCTTCGCTTACAAAGGAGGACGTAGTGTGTACTAAAGATTCTGGAATGGGATATGTGCAAAAGAAGAACAGAATACATTACTCGGGACCGTTGGTGCCTGCAGGGGGAAGCATTATTGAAGACATGCTGAAAGAGCATGAGAGACAAATCCAGCAGGCTTTTAGAAAGGCGAAGACGAATAAGAGTTATGATGAGCTTTAA 1938 44.74 MGCICSRDSSEPEDSSQKESTTGKDVNKSSVQLVAPSPSKGEDLLSEIKLSRQASKANGGSVHKTKANGGSVHKTKANGGSVHRAREDDESIKPAKAKADNSLAAGRKPDIFRLASLSKVAEAEYVMAGWPSWLASVAGEAIKGWVPRRIDSFEKLEKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDRESVRFMAREIYILRKLDHPNVMKLEGLVTSKMSGSLHLVFEYMDHDLAGLAAAPGHKFSETQIKCYVQQLMQGLEHCHSRGILHRDIKGSNLLIDDNGVLKIGDFGLATCFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWGRTKLPLSTSFKPQHRYKSCISETFKSFPPPALALVNKLLAIEPEHRGSAAEALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKRKAEAVKGHHPESVRRGLRDTKAAPTPEFNTQGDFTIKVHPIAKKMSMKYNPQEDGEPPRVAQSRYTHSTSMVHPTIASSWCKPTGASRNCADLRTQKSQMHQTVGDSATSSLTKEDVVCTKDSGMGYVQKKNRIHYSGPLVPAGGSIIEDMLKEHERQIQQAFRKAKTNKSYDEL 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4632630 4636870 - CmaCh01G008430.1 Cma01g00843 286536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00843 645 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524
Cma01g00843 645 ProSiteProfiles Protein kinase domain profile. 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00843 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Cma01g00843 645 PANTHER CELL DIVISION PROTEIN KINASE 92 638 - -
Cma01g00843 645 Gene3D Phosphorylase Kinase; domain 1 140 235 - -
Cma01g00843 645 CDD STKc_CDK9_like 153 437 - -
Cma01g00843 645 Coils Coil 455 475 - -
Cma01g00843 645 Pfam Protein kinase domain 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00843 645 SMART serkin_6 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00843 645 MobiDBLite consensus disorder prediction 1 101 - -
Cma01g00843 645 MobiDBLite consensus disorder prediction 466 485 - -
Cma01g00843 645 SUPERFAMILY Protein kinase-like (PK-like) 146 445 IPR011009 -
Cma01g00843 645 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 92 638 - -
Cma01g00843 645 Gene3D Transferase(Phosphotransferase) domain 1 236 477 - -
Cma01g00843 645 MobiDBLite consensus disorder prediction 80 96 - -
Cma01g00843 645 MobiDBLite consensus disorder prediction 51 65 - -
Cma01g00843 645 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00843 Cma-Chr1:4632630 Cma04g00549 Cma-Chr4:2787202 0 dispersed
Cma04g02532 Cma-Chr4:17343136 Cma01g00843 Cma-Chr1:4632630 6.61E-115 transposed
Cma20g00021 Cma-Chr20:74064 Cma01g00843 Cma-Chr1:4632630 3.39E-122 transposed
Cma01g00843 Cma-Chr1:4632630 Cma09g01247 Cma-Chr9:8355019 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68267 PF00069 Pkinase 7.10E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00843 K08819 - csv:101208709 1074.31