Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00851 ATGGGGAGACACGGTGCAGCAACGTCGATCTACCGAGGAGTTCGCAAGCGTAAATGGGGCAAATGGGTGTCCGAGATTCGCGAACCGGGAAAGAAGACGAGAATATGGTTAGGCAGCTTCGAGACCCCGGAGATGGCAGCGGCAGCCTACGACGTTGCTGCCTACCATTTCCGTGGTCGCGACGCACGTCTCAACTTCCCTAATCTTGTTGACTCTCTTCCCTTACCTCTTGGTTCTTCCTCTGATGACATCCGCCTTGCTGCTCAGGAGGGAGCGTTGCGATTACGAACAACGCCGACCGTTGTGCCTGAGAGAAGTGGAACTGGTGGATTGGGACTGGCCCCAGTCACAGTGCGGTTGTCGCCAAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGATTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGGTGATGGAGGAGTATTCAAAAGAGGATGAAATGTGGGAGAATATGCAGAATGATTCGCTGTGGGATCCTTAG 513 53.8 MGRHGAATSIYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPNLVDSLPLPLGSSSDDIRLAAQEGALRLRTTPTVVPERSGTGGLGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSESLVMEEYSKEDEMWENMQNDSLWDP 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4787817 4788329 + CmaCh01G008510.1 Cma01g00851 286544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00851 170 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Cma01g00851 170 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cma01g00851 170 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Cma01g00851 170 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Cma01g00851 170 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Cma01g00851 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 169 - -
Cma01g00851 170 CDD AP2 9 69 IPR001471 GO:0003700|GO:0006355
Cma01g00851 170 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Cma01g00851 170 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Cma01g00851 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 4 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00851 Cma-Chr1:4787817 Cma09g01258 Cma-Chr9:8466778 4.81E-53 dispersed
Cma01g00851 Cma-Chr1:4787817 Cma01g00852 Cma-Chr1:4796487 3.43E-52 tandem
Cma01g00851 Cma-Chr1:4787817 Cma09g01255 Cma-Chr9:8430579 2.08E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34295 PF00847 AP2 4.20E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00851 - - csv:101207243 257.684