Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00852 ATGGAACCCACTTATAGAGGCGTTCGTAAGCGCAAATGGGGGAAATGGGTCTCGGAAATCCGCCAACCCGGAAAAAAAACCCGAATCTGGCTCGGCAGTTACGACTTCCCGGCGATGGCTGCTGCCGCATACGACGTCGCCGCACTCCACCTCCGCGGGCGTAATGCACATCTCAACTTCCCCGAGCTGGCTGAGACCTTCCCCCGGCCTGAGAGTTCGAGGGCAGAGGACATTCAGAGTGCGGCGCAGATGGCTGCATTGCAAATGAGGAACCCGGTCGGGGCGGCGCCTGTTAGAGTGGGGCTGTCGGAGAGTGAGATACAGGCGATAAATGAGTCGCCGTTGGATTCGCCGAGGACGATGTGGATGCAGATGGCGGCGGAGGCAGTTTGTTTGGAGGAAGAGACGGGGTTTGATGAGGGGGAGGATAACATCACGCATCGTTCCATTTGGGATTCTTGA 462 58.01 MEPTYRGVRKRKWGKWVSEIRQPGKKTRIWLGSYDFPAMAAAAYDVAALHLRGRNAHLNFPELAETFPRPESSRAEDIQSAAQMAALQMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAVCLEEETGFDEGEDNITHRSIWDS 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4796487 4796948 + CmaCh01G008520.1 Cma01g00852 286545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00852 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 152 - -
Cma01g00852 153 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Cma01g00852 153 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Cma01g00852 153 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Cma01g00852 153 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Cma01g00852 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 152 - -
Cma01g00852 153 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Cma01g00852 153 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Cma01g00852 153 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
Cma01g00852 153 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00852 Cma-Chr1:4796487 Cma09g01258 Cma-Chr9:8466778 5.56E-61 dispersed
Cma01g00851 Cma-Chr1:4787817 Cma01g00852 Cma-Chr1:4796487 3.43E-52 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34296 PF00847 AP2 2.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00852 - - cmax:111471982 307.76