Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00876 ATGCGGTGGCGTATCGGAGCTCTTCTGCGTGATAGAAGAACTGTTGAACTGCCTATTAGTGGAAGGAATCACTTCTATAGAGTTTCTCTGTCTTTGGCTTTTATTCTGTGGGGACTTACCTTCCTCTTTAGCTTATTGTTCAGCCGTGGGGATGGCTGCCAAGAAGGATCTGTTGTACTACCTGCTGGTGCATCTACTTCAAATGAACCTAAATTGGAAAATAACGAGGACTCTGACCTTTTACATGGTCCTCCAAAGGGGGAAAACGATTGTCCCAGCCATCTAAAGGATTCATGCTCAACTGATGCTACAAGCCATGGTTCTAACAATGAAGAACTTTCACGTGAAGAAAGTAGTAGTCATATACGAACTGCTACAGGGTTTCCTGAAGCTGGGAGCTCTAGCACTGGAGTGAAATCGGAAACCAAACCTCTGAAGGAAGGTATCTCGTCCAATACCGTTCTGTTGGGCCTTGAAGAATTCAAAAGCAGAGCCTTCATATCCAGAAGTAAGTCTGAAACCGGGCAGACCGGGAATAGTATCCATAGAGTAGAGCCTGGTGGTGCAAAGTACAATTACGCTTCAGCTTCAAAGGGAGCAAAGGTATTGGCTTTCAACAAGGAAGCAAAGGGAGCCTCTAATATTTTAGGGAGGGACAAAGATAAATACCTCAGAAATCCATGTTCTGCTGAAGAGAAATTTGTTCTCATAGAACTGTCAGAAGAAACCTTAGTAGTTACAATTGAAATTGCTAATTTCGAGCTCCATTCCTCTAACTTAAAAGAATTTGAGCTACATGGAAGTTTGGTTTATCCAACGGATGTTTGGTTCAAGCTTGGGAATTTCACTGCTCCAAATGCAAAGCAGGCACATAAGTTCGTTCTCAAGGACCCAAAATGGGTGAGATATTTAAAGTTGAACCTTCTTACTCATTATGGTTCAGAATTCTATTGCACGCTCAGCAGGGTTGAAGTTTATGGAATGGATGCAGTTGAGATGATGCTGGAGGATTTAATAGCTCAACATAAACCTTCTGTTATATCAGATGAAGCTACTAATGATAAGAGAGCAATTCCCTCCCAGTCCGGATCCAATGATGAAAGACAACATGGTAGAGAGTTGCAATCTCTAGCCACTGATGAAAGTGATGATGTGATTTTAGAACCTTCAAATAGTAATATAATTGATCCAGTCGAAGAACAGCACCATCAACAACCTGGAAGAATGCCCGGTGACACTGTTCTCAAAATTCTGACTCATAAAGTTCGTTCATTAGACCTAAGTTTATCTGTTTTGGAGCGGTATCTGGAGGAATTGACTTCCAAATATGGCACTATACTCGAAGGATTAGACGAAGATATAGGAAATAATCATCTACTCATTGTGAAGACCCGAGAGGATATAAGAAATATTCTTAAAATCCAGGACAGCGCAGATAAAGATGTTCGTGATCTCATTTCTTGGAAGTCCATTGCTTCCATGCAGTTGGATGGTCTGCAAAGGCATAACGCTGTTCTCAGGTTTTGA 1527 41.52 MRWRIGALLRDRRTVELPISGRNHFYRVSLSLAFILWGLTFLFSLLFSRGDGCQEGSVVLPAGASTSNEPKLENNEDSDLLHGPPKGENDCPSHLKDSCSTDATSHGSNNEELSREESSSHIRTATGFPEAGSSSTGVKSETKPLKEGISSNTVLLGLEEFKSRAFISRSKSETGQTGNSIHRVEPGGAKYNYASASKGAKVLAFNKEAKGASNILGRDKDKYLRNPCSAEEKFVLIELSEETLVVTIEIANFELHSSNLKEFELHGSLVYPTDVWFKLGNFTAPNAKQAHKFVLKDPKWVRYLKLNLLTHYGSEFYCTLSRVEVYGMDAVEMMLEDLIAQHKPSVISDEATNDKRAIPSQSGSNDERQHGRELQSLATDESDDVILEPSNSNIIDPVEEQHHQQPGRMPGDTVLKILTHKVRSLDLSLSVLERYLEELTSKYGTILEGLDEDIGNNHLLIVKTREDIRNILKIQDSADKDVRDLISWKSIASMQLDGLQRHNAVLRF 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4935735 4938341 + CmaCh01G008760.1 Cma01g00876 286569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00876 508 Pfam Sad1 / UNC-like C-terminal 206 328 IPR012919 -
Cma01g00876 508 PANTHER MEMBRANE PROTEIN CH1 RELATED 21 507 IPR045120 GO:0016020
Cma01g00876 508 Gene3D - 208 338 - -
Cma01g00876 508 MobiDBLite consensus disorder prediction 61 145 - -
Cma01g00876 508 MobiDBLite consensus disorder prediction 72 95 - -
Cma01g00876 508 MobiDBLite consensus disorder prediction 120 145 - -
Cma01g00876 508 MobiDBLite consensus disorder prediction 350 382 - -
Cma01g00876 508 SUPERFAMILY Galactose-binding domain-like 212 325 IPR008979 -
Cma01g00876 508 ProSiteProfiles SUN domain profile. 163 330 IPR012919 -
Cma01g00876 508 PANTHER GALACTOSE-BINDING PROTEIN 21 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00876 - - - csv:101220988 774.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00876 Cma09g01292 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00876 Cma-Chr1:4935735 Cma15g00019 Cma-Chr15:125127 1.37E-170 dispersed
Cma01g00876 Cma-Chr1:4935735 Cma09g01292 Cma-Chr9:8927228 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005606 0 3 0 0 0 1 3 1 1 1 1 1 2 1 2 2 1 0 3 1 1 2 3 1 1 1 2 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00876 Cma_Chr01 FPKM 1.04023 0.824594 0.352561 0.450206 2.358159 2.498979 2.649948 0.0 0.077288 0.0