Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00877 ATGGACGCGATCGAGGAGTTGGGTGAGTTGTCCGAATCGATGCGCCAAGCGGCTGCTTTGCTTGCCGATGAAGATGTTGACGACAATTCTACCTCTGGCGGTTCTTCTCGTAGGGCTACGACTTTTCTCAACGTTGTTGCGTTGGGTAATGTTGGTGCCGGCAAGTCTGCAGCCTTGAATAGTTTAATTGGGCATCCTGTTCTGCCAACTGGTGAAAATGGCGCTACACGAGCTCCAATTAGCATTGATTTGCAGAGGGATGGTTCTTTGAGTAGTAAATCAATTGTTCTGCAGATTGATAATAAATCTCAGCAGGTTTCTGCAAGTGCTTTGCGACATTCTTTGCAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGGGCCGAGATGAAATATATCTAAAGCTTCGCACAAGTACAGCACCTCCACTGAAGTTGATTGATTTACCTGGGCTTGATCAACGGGCAATGGATGATTCTGTGGTTAGTGAATATGCTGAACACAATGATGCAATTTTGCTAGTTATAGTACCAGCTGTCCAGGCTCCTGAAATTGCTTCATCTCGAGCCCTACGAACTGCGAAGGAATTTGATGCAGATGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCCTCAGATATCCCATGGGTTGCTATAATTGGTCAATCGGTTTCGATAGTTACTGCACAGTCTGGATCTGTTGGCTCCGAGAATTCCATGGAGACTGCATGGAAAGCAGAGAGTGAAAGTTTAAAAACTATACTACCTGGTGCCCCTCAAAGTAAGCTAGGTAGGCTAGCTTTAGTTGATGCATTGTCCCAACAGATCCGCAAACGAATGAAAGTCCGGCTTCCTAATCTTCTCTCCGGGTTACAAGGGAAGTCGCAAATAGTTCAGGATGAGTTAGTTAGGCTTGGTGAGCAAATGGTCAATGGTGTCGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGCTGGAAAATTGTTGCTAGCTTTGAGGGTAGTTTTCCAAATCGAATTAAGCAATTGCCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATTGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATATCACCTGAGAAGGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTGCATAGAGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATATCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGTGCTGCCCTGGATGGGTTTAAAAATGAATCAAAAAAGATGGTTGTGGCATTAGTTGATATGGAGCGAGCATTTGTCCCACCACAACACTTTATACGTCTTGTACAAAGAAGGATGGAAAGACAACGCCGGGAAGAGGAAGTGAAGACTAAATCATCAAAAAAAGGGCAAGAGGCTGAACAAGCGGTGACGAACAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGGGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTAAAGAAGATAAGGAAGTGCAGGAGGGTTCGGGTTTGAAGACAGCAGGTGCTGATGGAGAGATAACAGCTGGTTTCTTGTTAAAGAAAAGTGCAAAAACTAATGGATGGAGCAGGCGATGGTTTGTTTTGAATGCGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGACACTTTCGTGGTGTCATTACTTTAGAGGATTGTAATATTGAAGAAGCTACAGATGAGGAAGAGTCTCCACCTCCAAAGAGTTCAAAGGATAAAAAGGCTAATGGGCCCGATTCTGGAAAAGTATCAAGTCTTGTGTTTAAGATTACCAGCAAGGTTCCATATAAAACCGTTTTAAAAGTTCATAGTGCTGTTGTCTTGAAGGCGGAGAGTGCTGCGGACAAGGTGGAATGGATAAACAAGATACGCAATGTCATTCAACCGTCCAAAGGAGGACAGATGAGAGGTGTATCCTCCGAAGGTGGTCTTACTATGCGGCAGAGTCTATCTGATGGTTCTCTAGATACTATGGCTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAGGTTCGTGGTTATGTTGAAGCAGTGTTGAATAGTTTGGCTGCTAATGTTCCCAAGGCTGTTGTACTTTGTCAAGTTGAGAAGGCAAAGGAAGACATGCTAAATCAATTATATAGCTCGATCAGTGCCCAAAGCTCTGCAAAGATTGAGGAGCTTCTTCAGGAGGATCATAATGTAAAACGGAGGCGAGAACGCTATCAAAAACAATCCTCTCTCCTTTCCAAACTGACACGCCAGCTCAGCATTCATGATAATCAAGCATCTGCTGCTAGTTGGTCCGATGGTAGTCCAGAAAGCAGTCCCAAAACTAGCGGACCACCTGGAGGAGATGACTGGAGATCTGCATTTGATGCTGCTTCTAATGGCCGGGCTGACTACAGAAGATCTTCTTCCAATGGTTACAGTAGATCTAGTGATCCCGCACAGAATGGTGACATAAACTCAGGTTCGAACTCTAGTAGCCGTCGCACTCCAAACCGGCTGCCACCAGCACCTCCGCAGTCTTCTGGTTCCAGATACTTCTAG 2775 44.86 MDAIEELGELSESMRQAAALLADEDVDDNSTSGGSSRRATTFLNVVALGNVGAGKSAALNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIVLQIDNKSQQVSASALRHSLQDRLSKGSSGKGRDEIYLKLRTSTAPPLKLIDLPGLDQRAMDDSVVSEYAEHNDAILLVIVPAVQAPEIASSRALRTAKEFDADGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVAIIGQSVSIVTAQSGSVGSENSMETAWKAESESLKTILPGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSGLQGKSQIVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGSFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNESKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTKSSKKGQEAEQAVTNRASSPQTNSQQAGGSLKSMKEKPSKEDKEVQEGSGLKTAGADGEITAGFLLKKSAKTNGWSRRWFVLNAKTGKLGYTKKQEERHFRGVITLEDCNIEEATDEEESPPPKSSKDKKANGPDSGKVSSLVFKITSKVPYKTVLKVHSAVVLKAESAADKVEWINKIRNVIQPSKGGQMRGVSSEGGLTMRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSAKIEELLQEDHNVKRRRERYQKQSSLLSKLTRQLSIHDNQASAASWSDGSPESSPKTSGPPGGDDWRSAFDAASNGRADYRRSSSNGYSRSSDPAQNGDINSGSNSSSRRTPNRLPPAPPQSSGSRYF 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4939885 4952898 - CmaCh01G008770.1 Cma01g00877 286570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00877 924 CDD DLP_1 45 309 IPR001401 GO:0003924|GO:0005525
Cma01g00877 924 MobiDBLite consensus disorder prediction 835 924 - -
Cma01g00877 924 MobiDBLite consensus disorder prediction 637 654 - -
Cma01g00877 924 ProSiteProfiles GED domain profile. 745 838 IPR020850 -
Cma01g00877 924 Pfam Dynamin family 45 209 IPR045063 -
Cma01g00877 924 Coils Coil 799 819 - -
Cma01g00877 924 MobiDBLite consensus disorder prediction 527 552 - -
Cma01g00877 924 Pfam Dynamin central region 261 500 IPR000375 -
Cma01g00877 924 Gene3D Dynamin, middle domain 338 545 - -
Cma01g00877 924 Pfam Dynamin GTPase effector domain 743 825 IPR003130 GO:0003924|GO:0005525
Cma01g00877 924 MobiDBLite consensus disorder prediction 631 658 - -
Cma01g00877 924 ProSiteProfiles PH domain profile. 578 704 IPR001849 -
Cma01g00877 924 SMART dynamin_3 11 246 IPR001401 GO:0003924|GO:0005525
Cma01g00877 924 Gene3D Dynamin, middle domain 698 813 - -
Cma01g00877 924 MobiDBLite consensus disorder prediction 835 853 - -
Cma01g00877 924 SMART GED_2 740 826 IPR003130 GO:0003924|GO:0005525
Cma01g00877 924 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 39 309 IPR030381 GO:0005525
Cma01g00877 924 Gene3D - 37 324 IPR027417 -
Cma01g00877 924 MobiDBLite consensus disorder prediction 509 574 - -
Cma01g00877 924 SUPERFAMILY PH domain-like 580 704 - -
Cma01g00877 924 Gene3D - 578 697 IPR011993 -
Cma01g00877 924 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 68 77 IPR019762 -
Cma01g00877 924 PRINTS Dynamin signature 42 60 IPR022812 -
Cma01g00877 924 PRINTS Dynamin signature 67 84 IPR022812 -
Cma01g00877 924 PRINTS Dynamin signature 179 197 IPR022812 -
Cma01g00877 924 PRINTS Dynamin signature 198 214 IPR022812 -
Cma01g00877 924 MobiDBLite consensus disorder prediction 554 568 - -
Cma01g00877 924 SMART PH_update 579 706 IPR001849 -
Cma01g00877 924 MobiDBLite consensus disorder prediction 509 526 - -
Cma01g00877 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 318 IPR027417 -
Cma01g00877 924 PANTHER DYNAMIN-2A 2 856 - -
Cma01g00877 924 MobiDBLite consensus disorder prediction 874 908 - -
Cma01g00877 924 Pfam PH domain 583 703 IPR001849 -
Cma01g00877 924 PANTHER DYNAMIN 2 856 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00877 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1626.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00877 Cma09g01291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00877 Cma-Chr1:4939885 Cma15g00020 Cma-Chr15:129983 0 dispersed
Cma01g00877 Cma-Chr1:4939885 Cma09g01291 Cma-Chr9:8913046 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00877 Cma_Chr01 FPKM 46.348545 52.483868 43.930851 44.09922 31.053963 29.374954 32.809845 65.588806 60.695255 63.3055