Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00879 ATGTCGTCTTCCCCTAAAATTCCAACCTCAACGCTCCGTCTTCCATGGAAGCACCGTCTAATGCTTCGTCTCGGTACTATAGCCACCAACACCTTTTGCCGATCCGATTTCACCATCAACCGTTGGCTCACCGGAATCCTTGACCGGAGAACCCCCCCCTCTTCCAAACCAATAGACGGCGTCTCCTCTTCCGATCTCCTCATCGACAAATCCCGCAACCTCTGGGTTCGAATCTTCACCCCCATCGACGATGTTCAATCCCTGCCGGTGATTTTCTATTACCATGGCGGCGGCTTCGCTTTCTCTTACGCTGATTCATCTCTTTACCACACCACCGCTCACCAATTTGCCAAACAACTACGCGCCGTCGTGATCTCCGTTAACTACCGCCTCGCTCCGGAGTTCCGATTCCCGTGCCAATACGACGACGGATTCGACGCATTGAAATTCATAGACGAAATCGATGATGGGACATTACCGGCGAGCGCAGATTTGGGGCGTAGCTTCATTTTGGGGGAAAGCGCCGGGGGGAATCTGGGGCACCACGTGGCAGTGAGAGCGAGCGAGTACGCTTTCAAGAAACTGAAATTAATTGGGTTTATAGCGACGCAGCCGTTTATCGGGGCAGAGGAAAGAACAGAGTCGGAGATTCGGCTATGCAATCAGCCGCCGTTGAGTCTGAAACTTACGGATTGGTTTTGGAAGGCGTTTTTGCCAGTTGGGTCAGACCGAGACCACGCGGCGGCGAATGTTTTCGGGCCGAACGGAAGGGATATTTCGGGAGTGGAGAAGTTTCCGGCGACGGTGGTGTTAGTGGGAGGGTTTGATTTGCTGCAGGATGGGCAGAGGAGGTATTATGAGGGGCTGAAGAGAATGGGAAAGGAAGTGAAGATGGTGGAGCTTCCAAACGCCATTCATGGCTTCTTTTGCTTCCCCGATCTGCCGGAATATTCCTCCATGATTCAGGCGGTGAGGGATTTCATCGCCGCCCAATGGCAAAACTGTAAAAAGAAAGGACTCGTAGTTTAA 1029 52.48 MSSSPKIPTSTLRLPWKHRLMLRLGTIATNTFCRSDFTINRWLTGILDRRTPPSSKPIDGVSSSDLLIDKSRNLWVRIFTPIDDVQSLPVIFYYHGGGFAFSYADSSLYHTTAHQFAKQLRAVVISVNYRLAPEFRFPCQYDDGFDALKFIDEIDDGTLPASADLGRSFILGESAGGNLGHHVAVRASEYAFKKLKLIGFIATQPFIGAEERTESEIRLCNQPPLSLKLTDWFWKAFLPVGSDRDHAAANVFGPNGRDISGVEKFPATVVLVGGFDLLQDGQRRYYEGLKRMGKEVKMVELPNAIHGFFCFPDLPEYSSMIQAVRDFIAAQWQNCKKKGLVV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4962173 4963201 + CmaCh01G008790.1 Cma01g00879 286572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00879 342 Gene3D alpha/beta hydrolase 6 339 IPR029058 -
Cma01g00879 342 SUPERFAMILY alpha/beta-Hydrolases 48 329 IPR029058 -
Cma01g00879 342 Pfam alpha/beta hydrolase fold 91 309 IPR013094 GO:0016787
Cma01g00879 342 PANTHER ARYLACETAMIDE DEACETYLASE 11 331 - -
Cma01g00879 342 PANTHER ACETYL ESTERASE 11 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00879 - - - cmo:103498754 519.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00879 Cma-Chr1:4962173 Cma05g01003 Cma-Chr5:8048598 1.06E-121 dispersed
Cma17g01144 Cma-Chr17:7958504 Cma01g00879 Cma-Chr1:4962173 6.50E-74 dispersed
Cma08g00288 Cma-Chr8:1663679 Cma01g00879 Cma-Chr1:4962173 2.18E-118 transposed
Cma01g00879 Cma-Chr1:4962173 Cma09g01199 Cma-Chr9:7772195 1.21E-116 wgd
Cma01g00879 Cma-Chr1:4962173 Cma09g01288 Cma-Chr9:8886495 8.32E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1719 . . . . . . . . . . Cma01g00879 . Car01g00803 . . Cpe06g00949 . . . . . . . . Cla08g00168 . Cec08g0085 Cco08g0229 . Cmu08g0162 Cre08g0149 . . . . . . . Cme09g00114 . . . . . . . . Sed11g1771 Cmo01g00921 Cmo09g01210 . . . Car09g01079 . Cpe02g00985 Bhi06g00124 Tan10g1851 Cmetu09g1418 . . . . . . . . . . . Lsi08g00164 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00879 Cma_Chr01 FPKM 15.868805 16.776932 0.155236 1.429457 2.619824 1.82805 3.604928 11.175135 12.166347 11.327529