Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g00881 | ATGTTGAAGCTACAGCGATGGTTGTCCAGGAACCAGCTATTTGAACAAGTTGTGTGTAAGAAAGCTGTTCATGTTGACCATGCTTTTGGGTCACATCCTTTCTCATCTGGAGTCGGCATTCCAAGACAAAATTTTACTCATACAGTCCCAAAGAATGAAAATGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCAATGTTTCCTTGTCTGCCAACTTTCACTAAATTAAAGTCTGGGAGTCTTGTAGTTGATCGACGTGGTTCAGTACTGCTGACGTTCTTTCCTGCCATAGGGGAGCGCAAGTATGATTGGACAAAAAAACAGTACTTTTCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGTGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACACGCAAAGTACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCCCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCCAGTCTTCGCATGGAAAAGGGTTTTCAACCAAATAAGGTGAATCGTGAAGGATTGAGTTTAGAGTGGGAAAGATGA | 720 | 42.22 | MLKLQRWLSRNQLFEQVVCKKAVHVDHAFGSHPFSSGVGIPRQNFTHTVPKNENDRVYAAYNVYKGKAGVSMFPCLPTFTKLKSGSLVVDRRGSVLLTFFPAIGERKYDWTKKQYFSLSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNTQSTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSLRMEKGFQPNKVNREGLSLEWER | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 4979449 | 4994924 | - | CmaCh01G008810.1 | Cma01g00881 | 286574 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g00881 | 239 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 50 | 223 | IPR009044 | GO:0003677|GO:0006355 | |
| Cma01g00881 | 239 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 3 | 239 | - | - | |
| Cma01g00881 | 239 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 3 | 239 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Cma01g00881 | 239 | Pfam | Whirly transcription factor | 63 | 197 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Cma01g00881 | 239 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 54 | 239 | IPR009044 | GO:0003677|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00881 | Cma-Chr1:4979449 | Cma12g00715 | Cma-Chr12:3975161 | 8.63E-50 | dispersed | |
| Cma01g00881 | Cma-Chr1:4979449 | Cma05g00932 | Cma-Chr5:7543191 | 2.78E-52 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34297 | PF08536 | Whirly | 6.80E-53 | CL0609 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g00881 | - | - | csv:101219085 | 360.147 |