Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00881 ATGTTGAAGCTACAGCGATGGTTGTCCAGGAACCAGCTATTTGAACAAGTTGTGTGTAAGAAAGCTGTTCATGTTGACCATGCTTTTGGGTCACATCCTTTCTCATCTGGAGTCGGCATTCCAAGACAAAATTTTACTCATACAGTCCCAAAGAATGAAAATGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCAATGTTTCCTTGTCTGCCAACTTTCACTAAATTAAAGTCTGGGAGTCTTGTAGTTGATCGACGTGGTTCAGTACTGCTGACGTTCTTTCCTGCCATAGGGGAGCGCAAGTATGATTGGACAAAAAAACAGTACTTTTCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGTGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACACGCAAAGTACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCCCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCCAGTCTTCGCATGGAAAAGGGTTTTCAACCAAATAAGGTGAATCGTGAAGGATTGAGTTTAGAGTGGGAAAGATGA 720 42.22 MLKLQRWLSRNQLFEQVVCKKAVHVDHAFGSHPFSSGVGIPRQNFTHTVPKNENDRVYAAYNVYKGKAGVSMFPCLPTFTKLKSGSLVVDRRGSVLLTFFPAIGERKYDWTKKQYFSLSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNTQSTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSLRMEKGFQPNKVNREGLSLEWER 239
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4979449 4994924 - CmaCh01G008810.1 Cma01g00881 286574
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00881 239 Gene3D Transcriptional Coactivator Pc4; Chain A 50 223 IPR009044 GO:0003677|GO:0006355
Cma01g00881 239 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 3 239 - -
Cma01g00881 239 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 3 239 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cma01g00881 239 Pfam Whirly transcription factor 63 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cma01g00881 239 SUPERFAMILY ssDNA-binding transcriptional regulator domain 54 239 IPR009044 GO:0003677|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00881 Cma-Chr1:4979449 Cma12g00715 Cma-Chr12:3975161 8.63E-50 dispersed
Cma01g00881 Cma-Chr1:4979449 Cma05g00932 Cma-Chr5:7543191 2.78E-52 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34297 PF08536 Whirly 6.80E-53 CL0609 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00881 - - csv:101219085 360.147