Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00888 ATGTCTGGAAGTGGTGGAACTGCGATTTTCAAATGGAAGAAATTGAGGGCAATAAGGCTGCTCTGCTTCTCCAATCACAGTCACCGTTTGACCCAGATTTGCCCCATTTCGACCCATCTCAATAATCTTCATGCTTCGAGTTATCGCCGCCGGGAATCGTTTATCGGCGTTCAGGAGCGTTATAAATGGGACAACGGCGGGTCTGGTTCTGATGATTTCCATTCACAGTCCTACAACACAAGCACCCCAATCCGTAAGATTCGGGCCGAGGCTAATTGTCCACGTTGCTCTAAGCATATGGATATTCTCTTTTCCAACCGCCATTTCCCAACCCTTAATCCCCCTTCTTCTTCTCTTCCATCTTCTTCCGATGCTCCTCCGAACCGAAAAGAAGCTTACGAAGCTGTTAATTTGTGTCCCAATTGCAAGACCGCTTACTATTTCCGCCCTTACAAGATCGCTCCTCTACAGGGCAGTTTCATCGAGATCGGCAATCTGAATTCCAGACCGAAGAATTCCTTAGAAAGAAGAATTACTACCAAAGATGGTAAAGGTAATGCCATCGCCGGTTCTCCAGATGAAAATTATGTGAATAGTAGGTTGAGAGTCTCGTTTTTCGAAACTGCAAGATTGTATGGTGGAGAACCGCCTGAGAATTGGCCTCCTGGACCGCCTCCCGTTAATGGGCTGGCGGTGCATTCTCCTCCAGGTCCGCCATATGCGCCTGGTGTGAACTTCATTCGTGCTACAGGTCCTGGTGGAAGCACCTCGGGTTCGGGTGGAAATGGCGCTGGTGATGGGAAGAAGAGTGAGTGGGGAGGATCGAATTTGGGGAAGGATCTACCCACTCCTAAAGAGATTTGCAAGGGCTTGGACAAATTTGTTATTGGCCAAGAAAAAGCCAAGAAGGTACTTTCTGTGGCAGTACATAACCATTACAAACGAATATATCATGCTTCCTTGAAAAAATGCGCACCAGGAATTGAATCAGAAACCCAAGATATGATAGATGATGATGATAACGTGGAGCTTGAAAAGAGCAATGTTCTCTTGATGGGTCCAACAGGCTCTGGGAAGACGTTACTTGCGAAGACTTTAGCTCGCTTTGTCAATGTGCCATTTGTCATTGCTGATGCTACAACTTTAACACAGGCTGGTTATGTTGGAGAAGACGTTGAATCAATTTTGTACAAGCTACTTGCTTCAGCAGAATTCAATGTACAAGCAGCTCAGCAAGGGATGATTTACATTGATGAAGTTGACAAGATAACAAAGAAGGCTGAGAGTTTAAATATTAGCAGAGATGTTTCTGGTGAGGGCGTTCAACAGGCATTATTGAAGATGCTAGAAGGAACCATAGTAAATGTTCCTGAGAAGGGGGCAAGGAAGCATCCTCGGGGTGATAACATTCAGATAGATACAAAAGATATTTTGTTTATATGTGGCGGAGCGTTCGTAGATCTAGAAAAGACAATCTCTGATAGACGGCAAGATTCTTCTATTGGTTTTGGAGCACCTGTTCGTGCTAACATGAGAATGGGCGGGGTAACAAGTGCTGCAGTTACATCATCATTATTGGAAACGGTTGAGAGTTCTGATCTTATAGCATATGGCCTCATACCCGAGTTTATTGGGCGTTTTCCAATTCTTGTTAGCTTATCAGCCTTAACTGAAGACCAGCTTGTCCAGGTCCTCACTGAACCGAAGAACGCTCTTGGCAAGCAGTACAAGAAGTTGTTTAGCATGAATAAAGTGAAACTGCATTACTCAGAGAAAGCGCTGAGACGGATTGCCCAGAAAGCAATGAACAAGAATACTGGTGCCAGAGGATTAAGAGCCATACTAGAAACCATTCTTACTGAAGCCATGTATGAGATTCCAGATGTTAAGACTGGAGACGATAGAGTAGATGCTGTTGTTGTCGATGAAGAGTCCGTTGGCTCGGTAAATTTGGCTAGTTGTGGAGGGAAAATTCTTCGTGGGGATGGAGCATTGGAGCGCTACCTGGCTGAGACCAAGTTGAAAGAATCACAGGATAATTTGGAGGTGATTGAGTTACCGGAAGGTGAGACAGAGCTGTCATCAAGAGCCGTGAGTATATAG 2103 45.03 MSGSGGTAIFKWKKLRAIRLLCFSNHSHRLTQICPISTHLNNLHASSYRRRESFIGVQERYKWDNGGSGSDDFHSQSYNTSTPIRKIRAEANCPRCSKHMDILFSNRHFPTLNPPSSSLPSSSDAPPNRKEAYEAVNLCPNCKTAYYFRPYKIAPLQGSFIEIGNLNSRPKNSLERRITTKDGKGNAIAGSPDENYVNSRLRVSFFETARLYGGEPPENWPPGPPPVNGLAVHSPPGPPYAPGVNFIRATGPGGSTSGSGGNGAGDGKKSEWGGSNLGKDLPTPKEICKGLDKFVIGQEKAKKVLSVAVHNHYKRIYHASLKKCAPGIESETQDMIDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLASAEFNVQAAQQGMIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRMGGVTSAAVTSSLLETVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKLFSMNKVKLHYSEKALRRIAQKAMNKNTGARGLRAILETILTEAMYEIPDVKTGDDRVDAVVVDEESVGSVNLASCGGKILRGDGALERYLAETKLKESQDNLEVIELPEGETELSSRAVSI 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5111973 5121760 + CmaCh01G008880.1 Cma01g00888 286581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00888 700 Pfam C-terminal, D2-small domain, of ClpB protein 556 626 IPR019489 -
Cma01g00888 700 MobiDBLite consensus disorder prediction 241 279 - -
Cma01g00888 700 CDD AAA 346 457 - -
Cma01g00888 700 MobiDBLite consensus disorder prediction 217 235 - -
Cma01g00888 700 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 40 698 - -
Cma01g00888 700 Gene3D - 275 554 IPR027417 -
Cma01g00888 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 641 IPR027417 -
Cma01g00888 700 SMART AAA_5 345 507 IPR003593 -
Cma01g00888 700 MobiDBLite consensus disorder prediction 216 235 - -
Cma01g00888 700 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 276 646 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cma01g00888 700 SMART ClpB_D2_small_2 556 646 IPR019489 -
Cma01g00888 700 Pfam AAA domain (Cdc48 subfamily) 345 549 IPR003959 GO:0005524|GO:0016887
Cma01g00888 700 Gene3D - 555 654 - -
Cma01g00888 700 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 40 698 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00888 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101217900 1196.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00888 Cma09g01207 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00888 Cma-Chr1:5111973 Cma04g01896 Cma-Chr4:9892183 0 dispersed
Cma01g00888 Cma-Chr1:5111973 Cma09g01207 Cma-Chr9:7957753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1785 . . . . . . . . . . Cma01g00888 Cma09g01207 Car01g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00934 . . . . Car09g01068 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00888 Cma_Chr01 FPKM 8.388668 9.494007 9.607345 9.276775 9.381165 9.285853 9.209256 8.800399 8.486651 9.052314