Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00890 ATGGCCTCCTTGGCAGCCTCCACCGCCGCCGCCTCGCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCCTCTCCGGCGCCTCCGCCAGGTCAGCGTCCTCTGCTTCTAGCCCGGTGACCTCCAAGATCGTGGCGATTTTCGGGAAGAAGCCAGCCGCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCCGTCAATGACGAGCTCGCCAAGTGGTATGGCCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAACCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGTTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA 876 55.71 MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKPSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 5137054 5138776 + CmaCh01G008900.1 Cma01g00890 286583
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00890 291 SUPERFAMILY Chlorophyll a-b binding protein 73 281 - -
Cma01g00890 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Cma01g00890 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Cma01g00890 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 291 IPR001344 GO:0009765|GO:0016020
Cma01g00890 291 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 291 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00890 Cma-Chr1:5137054 Cma13g00541 Cma-Chr13:5617065 7.58E-67 dispersed
Cma01g00890 Cma-Chr1:5137054 Cma02g00036 Cma-Chr2:192688 1.43E-66 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00890 K08916 - csv:101218137 513.457