Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00890 | ATGGCCTCCTTGGCAGCCTCCACCGCCGCCGCCTCGCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCCTCTCCGGCGCCTCCGCCAGGTCAGCGTCCTCTGCTTCTAGCCCGGTGACCTCCAAGATCGTGGCGATTTTCGGGAAGAAGCCAGCCGCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCCGTCAATGACGAGCTCGCCAAGTGGTATGGCCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAACCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGTTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA | 876 | 55.71 | MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKPSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5137054 | 5138776 | + | CmaCh01G008900.1 | Cma01g00890 | 286583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00890 | 291 | SUPERFAMILY | Chlorophyll a-b binding protein | 73 | 281 | - | - | |
Cma01g00890 | 291 | Pfam | Chlorophyll A-B binding protein | 93 | 254 | IPR022796 | - | |
Cma01g00890 | 291 | Gene3D | Chlorophyll a/b binding protein domain | 80 | 291 | - | - | |
Cma01g00890 | 291 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 291 | IPR001344 | GO:0009765|GO:0016020 | |
Cma01g00890 | 291 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC | 1 | 291 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00890 | Cma-Chr1:5137054 | Cma13g00541 | Cma-Chr13:5617065 | 7.58E-67 | dispersed | |
Cma01g00890 | Cma-Chr1:5137054 | Cma02g00036 | Cma-Chr2:192688 | 1.43E-66 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00890 | K08916 | - | csv:101218137 | 513.457 |