Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00893 ATGCCTTTATTCAGAGATTTGTTGTTCTTGACATGCATGTCCCCAGGTCCTGATGTTTTATTTGGAGATTTCTTCAGGAATATTAGCGCATTGTCTCAATACTCAACTGTCTATGCCATCGACCTTCTTGGCTTTGGTGCATCTGATAAGCCTGCAGGCTTTGCATATACCATGGAAACATGGGCTGATTTGATATTGGATTTTGTGAAAGACATCATTAAGAGGCCAACTGTGCTAGTGGGTAACTCAGTGGGAAGCCTTGCTTGTGTGATTGCTGCTTCAGATTCTAGTCGCAATCTAGTTCGAGGACTTGTGCTCTTAAACTGTGCTGGTGGCATGAACAATAAAGCAATTGTTGACGATTGGAGGATCAAACTGTTATTACCTTTGCTTTGGCTGGTCGATTTCTTATTGAACCAAAGGAGAATTGCTTCAGCTCTGTTTGAGCGTGTGAAGAAGAGAGATAGCTTGAGGGACATTTTGTCGTCCGTATATGGAAACAAGGAAAATGTGGATGAAGATCTGATAGATATAATATTCGAACCAGCCAATGACGAAGGGGCACTTGATGCATTTGTTTCGATCGTAACGGGGCCACCAGGGCCCAGCCCGGTGCAACTAATGCCAAAAATTTCCGTGCCTGTTTTGATTTTATGGGGAGATGAAGATCCATTCACGCCACTTGATGGTCCTGTTGGGAAGTACTTCTCCAAGTTATCTGTGGAATCTCCAAATGTCAGTCTTTGTGTGTTGAAAGGGGTAGGACATTGCCCTCATGATGACAGGCCTGAATTAGTGCATGAAAAGCTCCTTCCATGGCTGGCTCAGCTTCATGCTTTATAA 843 43.65 MPLFRDLLFLTCMSPGPDVLFGDFFRNISALSQYSTVYAIDLLGFGASDKPAGFAYTMETWADLILDFVKDIIKRPTVLVGNSVGSLACVIAASDSSRNLVRGLVLLNCAGGMNNKAIVDDWRIKLLLPLLWLVDFLLNQRRIASALFERVKKRDSLRDILSSVYGNKENVDEDLIDIIFEPANDEGALDAFVSIVTGPPGPSPVQLMPKISVPVLILWGDEDPFTPLDGPVGKYFSKLSVESPNVSLCVLKGVGHCPHDDRPELVHEKLLPWLAQLHAL 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5151235 5152699 + CmaCh01G008930.1 Cma01g00893 286586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00893 280 SUPERFAMILY alpha/beta-Hydrolases 22 276 IPR029058 -
Cma01g00893 280 Gene3D alpha/beta hydrolase 12 278 IPR029058 -
Cma01g00893 280 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 23 278 - -
Cma01g00893 280 PRINTS Alpha/beta hydrolase fold signature 34 49 IPR000073 -
Cma01g00893 280 PRINTS Alpha/beta hydrolase fold signature 215 229 IPR000073 -
Cma01g00893 280 Pfam Alpha/beta hydrolase family 26 267 IPR000073 -
Cma01g00893 280 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 23 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00893 - - - cmax:111471988 507.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00893 Cma-Chr1:5151235 Cma16g00609 Cma-Chr16:3163212 1.69E-41 dispersed
Cma01g00893 Cma-Chr1:5151235 Cma04g00749 Cma-Chr4:3818144 4.61E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1795 . Blo12g00803 . Bda03g00369 . Bpe04g00332 Bma04g00347 . . . Cma01g00893 . Car01g00814 . . . . . . . . . . . Cla08g00207 . . . . . Cre08g0181 . . . . . . . . . . . . . . . . . Cmo01g00937 . . . . . . Cpe02g00973 . . . . . . . . . . . . . . Lsi08g00193 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005437 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00893 Cma_Chr01 FPKM 8.794732 7.735295 24.754772 22.476665 39.274242 40.844597 49.80006 11.802575 10.350997 13.416614