Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00902 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTCGTTCTAATCAATGCTGATGAGGTTGCAAGAGTAAGTCATTTTCTTTTGATTTCTACTCAAAATGCTGCATTTTCCACTCAATTTGTGATGTTTCTCGCTTCTTTTGCCTCTGAATCTCTCCTTTTTATGCCCCTCATCTTGTTCACAATCCCAGTGTGGATCTTGAAGTTTCAATTACAGATTGTGGATCCTTCTCAAGTGACATCTGTGAAAGAGTTGAGCGGGCAAATTTGTCAGATCTGTGGGGATGAGGTAGAAGTCACCGATGATGGAGAGCCATTTGTTGCGTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACTAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGTGATGAAGAAGAAGATGATATTGATGATCTTGAGAATGAGTTTGACATTGCAAACAAGGATCCCAACAGTTTATCTGAGGCAATGCTCTATCCTCACCTTGCTGTCGGTCGTGGTTCTCATGCTAATGGTTATGGAAATACGGGTTCCGACCTCGACTCATCCGTTCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCACGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCAGTGCCATTCACTGATTCACCCATGTCCGCCAATCCAAGGCCTATGGATCCGAAAAAGGATTTAGCTGTGTACGGATATGGAACTGTTGCGTGGAAGGAACGAATGGAGGACTGGCGGAAGAAACAAAATGAAAGGCTTCAAGTGATTAAGCATGAAGGTGGAGGTGGAAAAGGTGACGATGAGTTCGACGATACGGATTTGCCTATGATGGATGAAGGGAGGCAACCACTTTCCCGAAAACTGCCCATCTCCTCGAGCAAGATAAATCCATACAGAATGATAATTGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATCCTCCACCCTGTCTATGAGGCGTATGGTCTGTGGTTAACATCAGTAATATGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTTCCGAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTACGTCAGTACGGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCGAACACCGTCCTGTCTATCCTTGCCGTAGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCAGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTTCAATATCGAACCTCGAGCCCCAGAGTGGTATTTTGCCCTGAAGGTCGACTATCTGAAAAACAAAGTTGATCCGACATTCGTCAGGGAACGACGTGCAATGAAGAGGGACTACGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCGGAAGATGGATGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTTGGTCAAAACGGGGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTTGTATATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTGCGTGTCTCGGCAATCATCTCCAACGCTCCATACATTTTGAATGTCGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGATCCAATTTCTGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCATGATCGATACTCAAATCGCAACGTTGTATTCTTCGACATCAATATGAAAGGATTAGATGGCATTCAAGGGCCGATTTATGTCGGAACTGGGTGTGTCTTCAGGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAGCACCAAGAAGGACTTGTAATTGTCTGCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAACCAAAGACCAGTGATAAAAAGAAGTTAAAGACCAAAGATACGTCGAAGCAGATTCACGCCCTCGAAAATATCGAGGAAGGTATTGAAGGAATAGATAATGAGAAATCATCACTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACCCTTATGGAAGACGGTGGCGTGCCTGGAGGCGGGACATCTGCTTCGTTGTTGAAAGAAGCCATCCACGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATCTATGGGTCTGTTACAGAGGATATTTTAACTGGTTTCAAGATGCATTGTCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGATCTGTCGAAATTCTTTTAAGCAGGCACTGCCCAATATGGTATGGATATGGATGTGGTTTGAAATGGCTTGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACATCGATTCCATTGATCGCTTATTGTACCCTGCCTGCTGTCTGTCTGCTTACTGGGCAATTTATCGTCCCTGAGCTAAGCAACTATGCGAGTATCATTTTCATGGCCCTTTTCATATCTATAGCAGCAACCGGTATACTAGAAATGCAGTGGGGAGGTGTTGGGATTCACGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCATCGTCCCATCTTTTTGCTCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACGGTCACGTCGAAGGGAGGAGACGATGGGGAGTTTTCGGAGCTTTACCTCTTCAAATGGACATCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATCATTGGAGTAGTCGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGTCCGCTCATCGGTAAGCTTTTCTTTGCATTCTGGGTTATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATTCTTCTATCATCCATCCTGTCACTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTATTGGAAGTCTGTGGGTTAAACTGTGACGACTAA 3438 44.59 MDTKGRLIAGSHNRNEFVLINADEVARVSHFLLISTQNAAFSTQFVMFLASFASESLLFMPLILFTIPVWILKFQLQIVDPSQVTSVKELSGQICQICGDEVEVTDDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSLSEAMLYPHLAVGRGSHANGYGNTGSDLDSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSPMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVYEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKNKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKPKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFSELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5351284 5356877 - CmaCh01G009020.1 Cma01g00902 286595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00902 1145 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 564 710 IPR029044 -
Cma01g00902 1145 Pfam Zinc-binding RING-finger 86 161 IPR027934 -
Cma01g00902 1145 CDD mRING-HC-C4C4_CesA_plant 93 143 - -
Cma01g00902 1145 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 77 1143 - -
Cma01g00902 1145 Pfam Cellulose synthase 418 1132 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma01g00902 1145 ProSiteProfiles Zinc finger RING-type profile. 95 141 IPR001841 -
Cma01g00902 1145 Coils Coil 155 175 - -
Cma01g00902 1145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 168 IPR013083 -
Cma01g00902 1145 PANTHER CELLULOSE SYNTHASE 77 1143 - -
Cma01g00902 1145 SUPERFAMILY Nucleotide-diphospho-sugar transferases 432 937 IPR029044 -
Cma01g00902 1145 SUPERFAMILY RING/U-box 82 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00902 Cma-Chr1:5351284 Cma03g01067 Cma-Chr3:7347798 0 dispersed
Cma01g00902 Cma-Chr1:5351284 Cma09g01181 Cma-Chr9:7489487 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00902 K10999 - csv:101214061 2069.66