Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00917 ATGGATCCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCGTTTCCTAATATTGATGCCCAGCAACATGAACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGACCAGCCTTTTCAAGAATATGAAGAACAGACCGAATTGAAGGCGTCCTTAACGTGTAACTCGAATCAACAAATTGGAATCCTGAATAAAGATAGTGATCAGATGAATGCAGCAATTCTAGGCAGTAAGGTTCAAGATTGGGACCCAAGAGCGATGCTAAGTAATCTGTCTTTTCTTGAGCAGAAGGTTCATCAGCTTCAGGAACTTGTGCATTTGATCATTGGCCGGAGGAGCCAAGTGTTGGGGAGGCCAGATGAACTCGTAGTTCAGCAACAACAGCTGATAACTGCTGATCTAACTTCAATTATTGTTCAGTTAATCTCAACAGCAGGTAGTCTGCTTCCTTCTGTAAAGCATAACTTTTCTGCAGCTGTTCCTCTGGTCGGGCAGCTAGAGCCGCCGCTCGACAGGGTTCTTTTTGCATCTGAATCCGGGACGAATAATGGCGTTGTTCAGTCGCAACATGGTGATGGAACGAAACTTCCCGAGGTTCCAACTCGAATAGACGAGAGTAGCAAGTATGGGAAGGAACAGAACATGAGTGTTGAAGAACACGAATTGAAGGATGAAGAAGACGCAGACGAAAGCGAGAACCTCCCCCCAGGTTCATATGAAATATTGCAACTAGAAAAAGAAGAGATCCTAGCACCTCACACTCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCATATGAGGGGTCACGGTGACGAATACAAAACCGCTGCTGCTCTTGCAAAGCCGCACAAAGAACCGAGTTATGAGACGATGCTGATTAAGAGGTACTCGTGCCCCTTCACCGGGTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTAAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCCAAGAAGTTCTCAGTAATTGCTGATCTCAAAACACACGAAAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCAAGGAAAGACAAGCTGTTTGGACACATTGCTCTCTTTCAAGGCCACACTCCTGCAATTCCTCTCGAAGAATCGAAGGGAACAGCCATGTCCTGTGATCGAGGAGAACGCTATGAAACAGCGAATAAGCTCGGGAGTATAAATTTCAGTTTCGGGTCGATTGCTTCGGGAGGAAGTTCAGTTGAAACCATAGCAGCAGCAGATGCAAAAGGTGGTGTTGATGATCCTCTTACTTATTACTCGCCATTGAACTTCGATCCGTGTAATTTTGGTGGCTATCACGAGTTTCCTCGACCACCATTCGAGAACGCAGAGAATGCGTTTCCGTTCCTTATCCCGACATCTAGCAATTACAACCAGAAATCTGGCGCAGAATCAAGCTGTAATAACCTTGAATGA 1551 44.17 MDPEDSLCSSEVWTKSSSFPNIDAQQHEQKWVDTSILDYAMDQPFQEYEEQTELKASLTCNSNQQIGILNKDSDQMNAAILGSKVQDWDPRAMLSNLSFLEQKVHQLQELVHLIIGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNFSAAVPLVGQLEPPLDRVLFASESGTNNGVVQSQHGDGTKLPEVPTRIDESSKYGKEQNMSVEEHELKDEEDADESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKEPSYETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEESKGTAMSCDRGERYETANKLGSINFSFGSIASGGSSVETIAAADAKGGVDDPLTYYSPLNFDPCNFGGYHEFPRPPFENAENAFPFLIPTSSNYNQKSGAESSCNNLE 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5565297 5566847 - CmaCh01G009170.1 Cma01g00917 286610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00917 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 288 IPR013087 -
Cma01g00917 516 SUPERFAMILY beta-beta-alpha zinc fingers 259 287 IPR036236 -
Cma01g00917 516 SMART c2h2final6 348 370 IPR013087 -
Cma01g00917 516 SMART c2h2final6 261 283 IPR013087 -
Cma01g00917 516 SMART c2h2final6 310 343 IPR013087 -
Cma01g00917 516 Gene3D Classic Zinc Finger 245 313 - -
Cma01g00917 516 MobiDBLite consensus disorder prediction 188 241 - -
Cma01g00917 516 MobiDBLite consensus disorder prediction 203 227 - -
Cma01g00917 516 ProSitePatterns Zinc finger C2H2 type domain signature. 263 283 IPR013087 -
Cma01g00917 516 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 499 - -
Cma01g00917 516 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 499 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00917 Cma-Chr1:5565297 Cma07g00547 Cma-Chr7:2360128 2.10E-75 dispersed
Cma13g00258 Cma-Chr13:2152325 Cma01g00917 Cma-Chr1:5565297 1.08E-78 transposed
Cma01g00917 Cma-Chr1:5565297 Cma09g01147 Cma-Chr9:6561937 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34299 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00917 - - cmax:111471438 1051.97