Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00920 ATGCTGCGTTTATGCCCAACTTTGTATCCCCTGTTCTCTTTGTTCTTCATTTCTTGTTTCCCCTTTCTGAAATCTGAGCTCCCTGCATCTCAACGTGCTACCTTGCTTGATCTCTCTAAGCTTCTCGGTTCTTGGGATGTCGACAAGAACCCTAATCCATGTTCGTGGAAGGGTGTTGGATGCAATTTTGATAATTCCTCTGTTACTGACATTACTCTCTCTGGATCTTCTCTTTCTTCCGACAACGTTTTGCCTGTTATTTGCCAGATTGATACTCTACAGGCACTCGATGTCTCACAGAACAGCTTGAATCATATTCCGGGGGAATTTATCGAACTTTGTGGAGCGATTTCTGGGTTGAGATTGCTGAATTTCAGCAACAACAGGTTAGTTGGTCCTTTGCCTTCTTTTGTTGGGTTTAAGAGGTTGGAGATCTTGGATTTGTCTTTCAATTTCATGAATGGAAACATTGATTTGCAGTTGGCTGAACTGATCAGCCTTAAATCTTTGAATCTTAGTTCCAATAGTTTCAGTGGCCCTCTTCCTACCAAAATTGGAAGAGACAGGGCCTTAGAACAGCTCCAGCTTTCTAAGAATCAATTTCGAGGGACAATCTCAGAAGATATTGTTGGATATATGAACTTGACATTTATTGATCTGAGTTCAAATTATCTTTCTGGGTCTCTTCCTCTGCAAATTGGGAATCTCTCCAAGTTGGAGTTTCTTATTCTATCTGCAAATAAGTTCAGTGGAGCAATTCCAGAAAGTGTGTCAAGAATCAGCTCTCTTGTGAGATTAGCAGCTCACGAAAATAGATTTATTGGTAAGCTTCCTATTGGGATAACAAATTATGTCAAGAATTTAGATCTTAGTTACAATAACATCAGTGGTTCCATTCCAGTAGGGCTCTTATCCAAACCACAACTAGAAACTGTGGATTTGTCTCATAATGAATTAGAAGGGCCTATTCCTGGAGATGTATCTTCCAGTTCTATCTTGGTTAGGTTGAGACTGGGAAGCAATATGTTGAATGGCACAATCCCTGCAACATTTGGAAAACTTCAGAAATTGATGTACTTAGAATTGGACGATAATAAGCTGACCGGTGTGATACCTAACGAGTTAGGCGCTTGCAAGATTCTGTTGCTGTTGAATTTGGCTCAGAATAATCTGGAGGGAAGGTTACCATCACAGTTGGGGAATCTTCAAGCTCTTCAAGCATTGAGACTTGAATCCAACAACCTGTCTGGAGAACTTCCATTAGAGATTATGCAACTAAGAGAACTGATGATTCTAAATCTTGGTTGGAACTCTCTCAATGGTTCGATACCACGTTCTATATCGGTCTTAAACAGGCTTGTTAAATTGAATTTACAGGGTAACTATTTTGTTGGTGCCATACCTGATACGATTCGTGAGATGAGTTCATTGATGGAACTCCAACTGGGTGGAAACCAATTAACTAATCCAATTCCAAAAATGCCAGAGAAGTTGCAGATTGCTTTGAATCTAAGCAGCAATCGTTTTGAAGGGCTGATTCCGAAGTCTTTTGTTGGACTTACTAGCTTGGAAGTGTTGGACCTCTCAAACAACCAGTTTTCTGGTGAGATTCCTGCGTATTTGGTTCAATTGGTATCATTGACAGAACTGAACCTTACTAACAATCAGCTCTCTGGCGTTATTCCTCCGTTTAGGACTTGGGTTTTGCTCGACACGAAAGGAAATCCAAATCTCATTCCTCATACTACGCCAATTGATACTTCTCCTCTTCGGAAGAAGAGAAAACCGATCATTGTGGCAATCGGCGTTGTGGTTGTTGTAGCTTTGTTTATTTCTGCTGCATTCGTAATTTTTATTTTCGTCATGACAAAACGTTATTATAAGGGAAATGTCCATGATTCTGAAGGGGAAGTTCCTCCTACTACAATGGTTATTCAGGGGAAACAATTGTCTCTTAATGTCATCCACCGCTCAAATATCGACTTTTCTGAAGCCATGGAGGCAGTGTCTGACCCTTCTAACATTGACATGAAAACTCGGCTTTGTACGTACTACAAAGTTTCCATGCCTCGTGGATCAAGCTATTATGTCAAGAAGCTCAAATGGAATGGCAAAATAGTTCAGCCGGGAAGTCGGGATAAGTTTGGGAAGGAAATGGAGGTCCTTGGGAGACTCAACAATTCAAATATCATGACTCCTCTAGCTTACGTTTTGACCACTGAGAGTACTTACCTATTCTTCGAATATGCTCCCAAAGGCACCCTTTTTGATAATCTACATGGTAGCTTAGGAAACGTCCTTGATTGGTCGAGTCGATACAGCATAGCTATAGGAGCAGCTCAGGGTCTCACATTTCTGCACGGATGTGCTTCTGGTCCTGTTCTTCTCCTTGATTTATCAAGTAAAAACATTTTTCTCAAGTCCCTCAAGGAGCCTCAAATTGGTGACATCGAACTTTGCAAGGTGATTGATCCCTCAAAGAGCACCGGAAGCCTTTCAATGGTTCCTGGTTCTGTTGGCTACATTCCTCCAGAGTATGCTTACACAATGAGGGTATCACCGGCTGGCAACGTCTACAGTTTCGGAGTGATTTTACTCGAGTTACTAACGGGAAAGACAGCAATTAGCGAGGGAGCCGAGTTGGTGAAGACTGTGTTAGGTTACCACTCTAAGCAGAATCAGAAATGGGAGCTGCAAATTCTGGACAACAGTATCAGCAAAACATCACCCTACGTTCGAAGCCAGATGGGTGCAGTCCTTGAAGTAGCCATTTCATGTGTGTCGCCTTCGCCCGAAGCAAGGCCAAAAATGAAGGCTGTCCTGAGAATGCTCCTTAATGCAAGATAA 2847 41.8 MLRLCPTLYPLFSLFFISCFPFLKSELPASQRATLLDLSKLLGSWDVDKNPNPCSWKGVGCNFDNSSVTDITLSGSSLSSDNVLPVICQIDTLQALDVSQNSLNHIPGEFIELCGAISGLRLLNFSNNRLVGPLPSFVGFKRLEILDLSFNFMNGNIDLQLAELISLKSLNLSSNSFSGPLPTKIGRDRALEQLQLSKNQFRGTISEDIVGYMNLTFIDLSSNYLSGSLPLQIGNLSKLEFLILSANKFSGAIPESVSRISSLVRLAAHENRFIGKLPIGITNYVKNLDLSYNNISGSIPVGLLSKPQLETVDLSHNELEGPIPGDVSSSSILVRLRLGSNMLNGTIPATFGKLQKLMYLELDDNKLTGVIPNELGACKILLLLNLAQNNLEGRLPSQLGNLQALQALRLESNNLSGELPLEIMQLRELMILNLGWNSLNGSIPRSISVLNRLVKLNLQGNYFVGAIPDTIREMSSLMELQLGGNQLTNPIPKMPEKLQIALNLSSNRFEGLIPKSFVGLTSLEVLDLSNNQFSGEIPAYLVQLVSLTELNLTNNQLSGVIPPFRTWVLLDTKGNPNLIPHTTPIDTSPLRKKRKPIIVAIGVVVVVALFISAAFVIFIFVMTKRYYKGNVHDSEGEVPPTTMVIQGKQLSLNVIHRSNIDFSEAMEAVSDPSNIDMKTRLCTYYKVSMPRGSSYYVKKLKWNGKIVQPGSRDKFGKEMEVLGRLNNSNIMTPLAYVLTTESTYLFFEYAPKGTLFDNLHGSLGNVLDWSSRYSIAIGAAQGLTFLHGCASGPVLLLDLSSKNIFLKSLKEPQIGDIELCKVIDPSKSTGSLSMVPGSVGYIPPEYAYTMRVSPAGNVYSFGVILLELLTGKTAISEGAELVKTVLGYHSKQNQKWELQILDNSISKTSPYVRSQMGAVLEVAISCVSPSPEARPKMKAVLRMLLNAR 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5585414 5589003 - CmaCh01G009200.1 Cma01g00920 286613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00920 948 Pfam Leucine rich repeat 502 557 IPR001611 GO:0005515
Cma01g00920 948 Pfam Leucine rich repeat 333 391 IPR001611 GO:0005515
Cma01g00920 948 Gene3D Phosphorylase Kinase; domain 1 683 755 - -
Cma01g00920 948 PRINTS Leucine-rich repeat signature 215 228 - -
Cma01g00920 948 PRINTS Leucine-rich repeat signature 520 533 - -
Cma01g00920 948 Gene3D Transferase(Phosphotransferase) domain 1 756 948 - -
Cma01g00920 948 SMART LRR_typ_2 236 260 IPR003591 -
Cma01g00920 948 SMART LRR_typ_2 90 113 IPR003591 -
Cma01g00920 948 SMART LRR_typ_2 426 450 IPR003591 -
Cma01g00920 948 SMART LRR_typ_2 164 188 IPR003591 -
Cma01g00920 948 SMART LRR_typ_2 354 378 IPR003591 -
Cma01g00920 948 SMART LRR_typ_2 520 544 IPR003591 -
Cma01g00920 948 Pfam Leucine rich repeat N-terminal domain 35 62 IPR013210 -
Cma01g00920 948 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 945 - -
Cma01g00920 948 ProSiteProfiles Protein kinase domain profile. 651 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00920 948 SUPERFAMILY L domain-like 278 562 - -
Cma01g00920 948 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Cma01g00920 948 Gene3D Ribonuclease Inhibitor 388 498 IPR032675 -
Cma01g00920 948 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cma01g00920 948 Gene3D Ribonuclease Inhibitor 186 281 IPR032675 -
Cma01g00920 948 SUPERFAMILY Protein kinase-like (PK-like) 685 944 IPR011009 -
Cma01g00920 948 Gene3D Ribonuclease Inhibitor 499 584 IPR032675 -
Cma01g00920 948 PANTHER F12K21.25 12 945 - -
Cma01g00920 948 Gene3D Ribonuclease Inhibitor 282 387 IPR032675 -
Cma01g00920 948 SUPERFAMILY L domain-like 51 371 - -
Cma01g00920 948 Pfam Protein tyrosine and serine/threonine kinase 707 944 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00920 - - - csv:101215630 1378.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00920 Cma-Chr1:5585414 Cma03g00068 Cma-Chr3:636694 2.59E-60 dispersed
Cma01g00920 Cma-Chr1:5585414 Cma07g01323 Cma-Chr7:7489953 1.17E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1402 . . . . . . . . . . Cma01g00920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011624 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68270 PF07714 PK_Tyr_Ser-Thr 1.50E-22 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00920 Cma_Chr01 FPKM 1.373169 1.758052 5.297171 5.760434 5.681091 5.755991 6.179568 7.691448 6.561952 8.147549