Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00933 ATGGACGGCCCCCCTGCGGGCGATATCTGTTCGATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAACTGCTCGCACTGGTTCTGCGGAAGGTGCATAATGCTTGTTTGGGATCATGGATCGACACTGCAGCCATGTAAATGCCCCTTATGTCGCCGACAGATCACTTTATTGGTTCCTTCTGAGGCTTCAGTAACGCAGCAAAGTGACCCTGAGGTTGCTCGTGTTCTTAACAATATAAGGAATTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAATCAGCGACTGCAGGACCTTCCTTTTCTCTTACGGAGATTGCTTCGGGAACTCCTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAGCACGCGTTTACACTGCAATGTTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCCGAAGCATTACTAGGGTTATTTGGACTGATGGATGATGCCTTTATACTGCTCATCTGCTTCCTTTATGTTGCTGCTTTATACCGATCGGTACTCCATAATCGCCATGGAGGAACTTGA 558 46.77 MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSTLQPCKCPLCRRQITLLVPSEASVTQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNRHGGT 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5803230 5812649 + CmaCh01G009330.1 Cma01g00933 286626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00933 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 103 IPR013083 -
Cma01g00933 185 SMART ring_2 10 52 IPR001841 -
Cma01g00933 185 PANTHER BNAC07G13660D PROTEIN 2 184 - -
Cma01g00933 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Cma01g00933 185 PANTHER UNCHARACTERIZED 2 184 IPR038896 GO:0061630
Cma01g00933 185 SUPERFAMILY RING/U-box 8 59 - -
Cma01g00933 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Cma01g00933 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00933 K15707 - cmo:103501307 325.865