Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00940 ATGACAAGAAACACAAATCTAAGAACGGTCTTGTTCTTTTCTGTGACTGTCTTGTTGTTCTTCTTCTCTTGTTGTGAAGGGGGAAGAGAAATAAGAAAGGGCAATGGAGGGATGATAAAGGGAATGTTTGTGTTTGGGAGCTCTCTAGTTGACAATGGCAACAATAACTTTTTAGAGAACTCAAGGGCCAAAGCGGACTTTTTACCTTATGGAATGGATTTTTCTCTCGGTCCGTTGGGACGATTTACGAACGGCAAGAATGTTATCGACCTTCTTGGTGATTATTTTCACCTTCCTTCTCCCATTCCTCCGTTCGCCGATCCTTCAACGAAGGGGAAGAAGATTGTTCATGGCGTCAACTATGCTTCTGGTGGCTCTGGTATTCTAGATAACACCGGTGCCATCACGGGAAATGTAATAAGTTTAAACACGCAAATCAAAAACTTTGAAACCGTAACGATGCCTGAATTGAGAAGAGGTAGGAGCATGAGGGTATTGTTAGACGAGTATTTGTTTGTGGTTGGGTCGGGAGGGAACGATTACTCATTCAACTACTTTTTGAGTAACCTCCACTCGGAACTCAGCCTCGACTCGTTCACAGCCAACCTCACAGCCACATTGTCTCAACAACTCAAAAAGCTGTATGGGTTGGGGGCAAGGAAAATAGTGTTGATATCAGTGAACCCATTAGGGTGCAGTCCAATGGTGAGAGCAAACAACAAAGGGCAATGCCTTGATATACTAAACCAAGCTGCTCAAATGTTCAATCTCAACTTGAAGACATTGGTGGATGACCTAAAACCACAAATGCCACTCTCCAATCTCGTCTTCCTTAATTCGTACAAGATTATCGATGATATTATCTCTCACCATATTTCTAAAGGGTTTATGGAGGCAGCTGTGCCCTGCTGCGAAGTGCCATCTCTGAGTGAAGGTGGGAATGGAATTTTGTGCAAAAATGGAGGGCAAACTTGTCCAAATAGAACCAACCATGTCTTCTTCGACGGGTTACATCCAACCGAAGCTGTCAATGTCCTCATAGCATCTAAGGCTTATGCTTCTCAACTTCAAACCGAAGTTTATCCCACTAATCTTCTTCACCTCGCCAATATATAG 1116 43.19 MTRNTNLRTVLFFSVTVLLFFFSCCEGGREIRKGNGGMIKGMFVFGSSLVDNGNNNFLENSRAKADFLPYGMDFSLGPLGRFTNGKNVIDLLGDYFHLPSPIPPFADPSTKGKKIVHGVNYASGGSGILDNTGAITGNVISLNTQIKNFETVTMPELRRGRSMRVLLDEYLFVVGSGGNDYSFNYFLSNLHSELSLDSFTANLTATLSQQLKKLYGLGARKIVLISVNPLGCSPMVRANNKGQCLDILNQAAQMFNLNLKTLVDDLKPQMPLSNLVFLNSYKIIDDIISHHISKGFMEAAVPCCEVPSLSEGGNGILCKNGGQTCPNRTNHVFFDGLHPTEAVNVLIASKAYASQLQTEVYPTNLLHLANI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5963191 5965211 + CmaCh01G009400.1 Cma01g00940 286633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00940 371 Gene3D SGNH hydrolase 35 358 IPR036514 -
Cma01g00940 371 Pfam GDSL-like Lipase/Acylhydrolase 43 350 IPR001087 GO:0016788
Cma01g00940 371 CDD SGNH_plant_lipase_like 42 352 IPR035669 -
Cma01g00940 371 SUPERFAMILY SGNH hydrolase 116 351 - -
Cma01g00940 371 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 9 370 - -
Cma01g00940 371 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cma01g00940 371 PANTHER OS06G0560700 PROTEIN 9 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00940 - - - csv:101214473 545.043
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00940 Cma09g01164 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00940 Cma-Chr1:5963191 Cma18g00287 Cma-Chr18:1526887 4.60E-72 dispersed
Cma01g00940 Cma-Chr1:5963191 Cma09g01164 Cma-Chr9:6911870 0 wgd
Cma01g00940 Cma-Chr1:5963191 Cma09g01244 Cma-Chr9:8334540 3.04E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1291 Blo01g01753 Blo12g00766 . Bda03g00416 . Bpe04g00382 Bma04g00393 Bma01g02536 . . Cma01g00940 Cma09g01164 . . . Cpe06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00848 . . . . . Sed10g1778 Cmo01g00980 Cmo09g01166 . . . Car09g01041 . . Bhi09g01567 Tan01g2976 Cmetu01g1498 . . . . Cla09g00962 Cam09g1014 Cec09g1017 Cco09g1029 . . Cre09g0977 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007522 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00940 Cma_Chr01 FPKM 0.0 0.0 0.0 0.0 25.098845 25.954378 22.222372 0.0 0.0 0.0