Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00944 ATGGCAGTCAGCTTTCTTGATAGGAAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATGACGCAGAACTTGAAAGACGAAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTTAAGAAAGTAGTGGGAGCTGGAAAGGAGCAAACTGGAACTGCTAGTTCTAATGGGATGCGTCGAGAATTGATGAGATTACCGAATCCGCACGAAACAGACAGATCAAACTTATATACAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGATCGACAGCTGCTTCTCATAAAGCGGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCAAATTACAGGATAAAATTATTGACGATCTTGGAAATGAAATGGACAGTACATCAAATCGCCTCGATTTTGTTCAGAAAAAAGTAGCGGTGGTCATGAAGAAGGCCAGCGCCAAGGGCCAGTTAATGATGATCTTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 600 44.67 MAVSFLDRKVDELDKAIAVAARDPSWYGIDDAELERRRRWTSTARTQVGNVKKVVGAGKEQTGTASSNGMRRELMRLPNPHETDRSNLYTAHQANDDFITSESDRQLLLIKRQDEELDELSASVERIGGVGLTIHEELKLQDKIIDDLGNEMDSTSNRLDFVQKKVAVVMKKASAKGQLMMILFLVALFIILFVLVFLT 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5997055 5998797 - CmaCh01G009440.1 Cma01g00944 286637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00944 199 Pfam Syntaxin 6, N-terminal 6 52 IPR015260 GO:0016020|GO:0048193
Cma01g00944 199 Gene3D - 2 57 - -
Cma01g00944 199 CDD SNARE_Qc 110 167 - -
Cma01g00944 199 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 107 169 IPR000727 -
Cma01g00944 199 SMART tSNARE_6 102 169 IPR000727 -
Cma01g00944 199 PANTHER SYNTAXIN 6 198 IPR045242 -
Cma01g00944 199 Pfam SNARE domain 144 195 IPR000727 -
Cma01g00944 199 Gene3D - 114 178 - -
Cma01g00944 199 SUPERFAMILY t-snare proteins 4 53 IPR010989 GO:0016020|GO:0016192
Cma01g00944 199 Coils Coil 145 165 - -
Cma01g00944 199 PANTHER SYNTAXIN-61 6 198 - -
Cma01g00944 199 SUPERFAMILY SNARE fusion complex 106 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00944 Cma-Chr1:5997055 Cma17g00042 Cma-Chr17:187111 4.50E-121 dispersed
Cma01g00944 Cma-Chr1:5997055 Cma09g00975 Cma-Chr9:4947413 4.50E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00944 K08500 - csv:101212527 293.123