Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00948 ATGCAAGACCCTAAGCGTCCATTCATGAGTTGCATTCGAGTTGTCAGAAACAAGAAAAAGTTGATGAATTTCTTGCCATGTTTCATATCAGAGGAGAGATTCAATAGGAAATGTTTGGAAAAGAGCATCGAGGAGTATTATGAGACTAAAACTTTAGCCTCACTCGCTATCATTTCCCTCGAATCTGAGAACAATAAGCGAAGGTACACAACAAAGGAGACAAAGAAGAAAGGCAAAGAGAAAAGCTTCGCACAAAATTTCACATTTCGTCAGCTATGCGTGGCCACAAATAACTTCAGCCACCACAATCTCTTAGGGGAAGGTGGCTTTGGAAGAGTTTACAAAGGCCTCATTGACACCACAAAACAAGTGGCTGTGAAGCAACTTGACCCAAATGGGTATCAAGGCAATAGAGAATTCCTTGTGGAGGTTCTAATGCTAAGCCTTCTTCGCCATCCCAACCTTGTCAATTTGGTTGGGTATTGCGTTGATGCATATCAAAGGATTTTGGTGTACGAGTACATGCCTAAGGGTTCCTTGGAGGATCATCTTCTTGGTATAGCTTCAGATAAGGGAGCTCTAGATTGGAAGACAAGGATGAAAATTGTGGAAGGAGTAGCTAAAGGGCTTGAATATTTACATGAAACGAATCCACCGGTGATATTTCGGGACTTCAAAGCTTCGAACATATTGCTCGATGAGGAATTCAATCCAAAACTCTCGGATTTTGGACTTGCAAAGCTAGGTCCCATGGGTGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGCTATTGTGCTCCTGAATATGCTCTTACCGGACAATTGACTACCAAATCTGATGTCTATAGCTTTGGTGTCGTGTTCTTGGAGATCATCTCTGGGAGAAGAGTTATTGACAACACGAAGCCAAGAGCGGAAAAGAATTTGCTTGCATGGGCACAACCACTTCTCAAAGATAGAAGGAAATTCATGCTGGTAGCGGATCCAAAGCTAAAAGGAAAATTTTCAGTGAAGGCTCTGTATCAAGCGTTGGCGGTAGTGTCTATGTGTTTACAAGAAGATGCAAATGAAGCTTGTGCGGCACAGTTGAGCTTCATTTTCTCTAAGAGTCGGCACGAACCACCTCCGTGGATTCTTCCCATAATTTATTCTCCTCCTTTTCCCTTTGCTAATCGGATGAAAAGGGTGCGAAACTAG 1206 42.54 MQDPKRPFMSCIRVVRNKKKLMNFLPCFISEERFNRKCLEKSIEEYYETKTLASLAIISLESENNKRRYTTKETKKKGKEKSFAQNFTFRQLCVATNNFSHHNLLGEGGFGRVYKGLIDTTKQVAVKQLDPNGYQGNREFLVEVLMLSLLRHPNLVNLVGYCVDAYQRILVYEYMPKGSLEDHLLGIASDKGALDWKTRMKIVEGVAKGLEYLHETNPPVIFRDFKASNILLDEEFNPKLSDFGLAKLGPMGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIISGRRVIDNTKPRAEKNLLAWAQPLLKDRRKFMLVADPKLKGKFSVKALYQALAVVSMCLQEDANEACAAQLSFIFSKSRHEPPPWILPIIYSPPFPFANRMKRVRN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6020324 6028235 - CmaCh01G009480.1 Cma01g00948 286641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00948 401 Gene3D Transferase(Phosphotransferase) domain 1 175 369 - -
Cma01g00948 401 PANTHER OS07G0668900 PROTEIN 23 360 - -
Cma01g00948 401 PANTHER OS07G0668900 PROTEIN 23 360 - -
Cma01g00948 401 Pfam Protein kinase domain 101 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00948 401 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Cma01g00948 401 SUPERFAMILY Protein kinase-like (PK-like) 83 363 IPR011009 -
Cma01g00948 401 CDD STKc_IRAK 105 360 - -
Cma01g00948 401 ProSiteProfiles Protein kinase domain profile. 99 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00948 401 Gene3D Phosphorylase Kinase; domain 1 59 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00948 Cma-Chr1:6020324 Cma04g00953 Cma-Chr4:4887290 0 dispersed
Cma01g00948 Cma-Chr1:6020324 Cma08g00010 Cma-Chr8:56342 1.74E-147 transposed
Cma01g00948 Cma-Chr1:6020324 Cma17g01421 Cma-Chr17:9377727 2.38E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68271 PF00069 Pkinase 3.70E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00948 - - cpep:111784398 647.506