Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00998 ATGTCATCCACTGTCGGTCAAGTCATCAAATGCAAGGCTGCTGTTGCATGGGAGGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAAGTGGCACCACCGCAGGCCAATGAAGTCCGATTGAGGATCCTCTTCACATCTCTCTGCCACACCGATGTTTATTTCTGGGAAGCCAAGGGTCAAGCCCCGTTGTTCCCTCGCATCTTTGGACATGAAGCTGGAGGTATTGTTGAGAGTGTTGGAGAAGGAGTCACAAATCTTAAACCAGGAGACCATGTTCTTCCTATTTTCACTGGTGAATGTGGGGATTGTCGCCATTGCCAGTCGGAAGAGAGCAACCTGTGTGATCTTCTTCGTATCAACACTGATCGTGGAGTTATGCTCAATGATGGCAAGACCAGATTCTCCATTAATGGACAGCCCATTTATCACTTCGTTGGAACCTCCACTTTCAGTGAATACACTGTTATTCACGTTGGCTGTTTAGCCAAGATCAACCCAGCTGCCCCTCTCGACAAAGTCTGTGTTCTTAGCTGCGGCATTTCCACAGGTCTTGGTGCCACTTTGAATGTTGCAAAGCCTACAAAGGGTTCATCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTCGCTGCGGCTGAAGGAGCAAGAATTGCCGGAGCATCCAGGATCATTGGTGTTGATCTGAACCCAGCTCGATTCGAAGAAGCGAGGAAATTCGGATGCAATGAGTTTTTGAATCCAAGGGATTACAAGAGGCCAGTTCAAGAGGTGATAGCAGAGATGACAGACGGAGGTGTCGACCGGAGTGTGGAATGCACCGGAAGCATTCATGCGATGATCTCAGCCTTCGAATGCGTTCACGACGGGTGGGGTGTTGCAGTACTAGTGGGAGTACCAAGCAGAGACGACGCATTCAAAACTCATCCCATGAAGCTCCTGAACGAGAGGACTCTAAAGGGTACCTTCTTCGGCAACTACAAGCCCCGATCCGACATTCCCGGAGTGGTCGAGAAGTACATGAACCAGGAGCTGGAGTTGGAGAAGTTCATCACACATACAGTGCCGTTTTCTGAGATCAACAAGGCATTCGATTACATGCTGAAGGGGGAGTCGATTCGATGCATTATTCGAATGGATGTGTGA 1143 49.52 MSSTVGQVIKCKAAVAWEAGKPLVIEEVEVAPPQANEVRLRILFTSLCHTDVYFWEAKGQAPLFPRIFGHEAGGIVESVGEGVTNLKPGDHVLPIFTGECGDCRHCQSEESNLCDLLRINTDRGVMLNDGKTRFSINGQPIYHFVGTSTFSEYTVIHVGCLAKINPAAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPARFEEARKFGCNEFLNPRDYKRPVQEVIAEMTDGGVDRSVECTGSIHAMISAFECVHDGWGVAVLVGVPSRDDAFKTHPMKLLNERTLKGTFFGNYKPRSDIPGVVEKYMNQELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMDV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7192934 7194911 - CmaCh01G009980.1 Cma01g00998 286691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00998 380 PANTHER ALCOHOL DEHYDROGENASE 1 4 378 - -
Cma01g00998 380 Gene3D - 19 370 - -
Cma01g00998 380 Gene3D - 183 321 - -
Cma01g00998 380 Pfam Alcohol dehydrogenase GroES-like domain 36 157 IPR013154 -
Cma01g00998 380 CDD alcohol_DH_plants 9 377 - -
Cma01g00998 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Cma01g00998 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Cma01g00998 380 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Cma01g00998 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Cma01g00998 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Cma01g00998 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00998 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - csv:101209854 697.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00998 Cma09g01088 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00998 Cma-Chr1:7192934 Cma09g01088 Cma-Chr9:5860605 0 dispersed
Cma01g00996 Cma-Chr1:7177605 Cma01g00998 Cma-Chr1:7192934 1.47E-72 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00998 Cma_Chr01 FPKM 81.815735 84.614204 4.828454 4.924724 0.0 0.0 0.0 1.009811 0.338125 0.491803