Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01007 ATGTCATTAGTCGGGCCATCCGATCCATCTCCGTTGTCGTATGGAACTCGCAAACTCTACTCGTTGAAAGGAACCAAGAATGCTTCCGACTTGTCCACGCAGAGATTTGGTTCCGAAAAGAATAGGACGATGTATATGAATGATTCGTATTGCAGTGAGAGCTACGACAAGTATTTCCTTGACTTCCCGATCGAAGAGCTATCGGTTTCTGGCATTTCTACTGATTCGTTTCATCCCAACGCTGCTTTGTATGGGATAAGGGCTGATTCTCTATCCCCTTTGTGTGATTCGTTTACACATTTTGATGCTTATCAATTGAACTCATACTCGGTTTGCCTTGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACAGAAGTTGCAAGAATTGGAGAGAGATCTGCTTGGCGAACCCGATTCTGCTGATTACGAGGATGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGATAGCGAATGGGCGAATTCAATTCAAGAGGCATTGCTTCATGACTCGCCGAAGGAATCATCATCGACGGATTCTAATTTCAGTACCAATAGTAGCAATAAGGATGCATCTCAGATATCATCACAGAATCCCAGACAGATACTTATAGAATGTGCTTCTGCTATCTCAGAAGACAACTTTGAAGAAGCATCAGCTATGATAGAACAGCTCCGGGGTATGGTCTCGGTTCAGGGAGATCCCTCACAGAGGATTGCAGCGTATTTAGTGGAAGGTCTTGCTGCTCGGTTGTTGGAGTCGGGGAAATGTCTTTATAAAGCCTTGAGATGCAAAGAACCCCCTTCCTCGGACCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTTGGCTTCATGGCTGCAAACTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCAGCTCAGCCAGGTAAGCCACCACATTTGAGGCTAACTGGTGTTGATGACCCCGAATCGGTACAGCGCCCTGTTGGAGGTCTTAGACACATTGGACAAAGGCTCGAGCAGCTGGCAAAAGCGCTGCGGGTTCCATTTGAATTTCATGCAATCGCCTCAAATGCTTCAGATGTCACTCCCTCAATGCTCGCCTCCCGGCCTGGAGAAGCACTCATAGTAAACTTTGCTTTTCTGCTTCACCACATGCCAGACGAAAGCGTTTCAACCGTAAATCTAAGAGACAGGCTTCTCCGAATGGTTAAGAGCCTGAATCCCAAACTAGTAACAGTCGTCGAACAGGACATGAATGCAAATACGACCCCATTCGTTTCAAGATTCATCGAAACTTATAACTACTATGCAGCTGTGTACGACTCTCTCGATGTAACACTTCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGACAATGCTTGGCGAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGCGATACGAAGTCGCTGGGAAATGGCGGGCGAGAATGACGATGGCTGGCTTCACTTCGTGTTCGATGAGCGAAAAGGTGACCGACCCGATCCGTAAACTTATTATGGAGGAGTATTGCGAGAGATTCAAGATGTATGAGGAAATGGGTACACTCCATTTTGGATGGGAAGAGAAAAGCTTGATAGTTACTTCAGCATGGAGGTAA 1731 45.35 MSLVGPSDPSPLSYGTRKLYSLKGTKNASDLSTQRFGSEKNRTMYMNDSYCSESYDKYFLDFPIEELSVSGISTDSFHPNAALYGIRADSLSPLCDSFTHFDAYQLNSYSVCLESTSPEQLDFEDDQVRQKLQELERDLLGEPDSADYEDEMFANGQSMEIDSEWANSIQEALLHDSPKESSSTDSNFSTNSSNKDASQISSQNPRQILIECASAISEDNFEEASAMIEQLRGMVSVQGDPSQRIAAYLVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFHAIASNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNANTTPFVSRFIETYNYYAAVYDSLDVTLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSEKVTDPIRKLIMEEYCERFKMYEEMGTLHFGWEEKSLIVTSAWR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7294187 7295917 + CmaCh01G010070.1 Cma01g01007 286700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01007 576 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 575 IPR030011 GO:0003700|GO:0005634
Cma01g01007 576 MobiDBLite consensus disorder prediction 176 203 - -
Cma01g01007 576 Pfam GRAS domain family 206 576 IPR005202 -
Cma01g01007 576 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
Cma01g01007 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 575 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00616 Cma-Chr1:3211473 Cma01g01007 Cma-Chr1:7294187 1.01E-68 dispersed
Cma01g01007 Cma-Chr1:7294187 Cma09g01087 Cma-Chr9:5848091 0 dispersed
Cma02g00793 Cma-Chr2:4707257 Cma01g01007 Cma-Chr1:7294187 1.37E-66 dispersed
Cma02g01076 Cma-Chr2:6408769 Cma01g01007 Cma-Chr1:7294187 8.91E-91 dispersed
Cma15g01078 Cma-Chr15:6858422 Cma01g01007 Cma-Chr1:7294187 2.11E-90 dispersed
Cma20g00394 Cma-Chr20:1888552 Cma01g01007 Cma-Chr1:7294187 4.34E-67 dispersed
Cma01g01007 Cma-Chr1:7294187 Cma20g00670 Cma-Chr20:3070596 3.94E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34306 PF03514 GRAS 2.50E-131 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01007 - - cmax:111480557 1144.03