Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01008 ATGGATTTTATTCTGTTGAAGAGAGATCTGATTACGGTTGGTGGTTTAACGTTTCAATTTGGCGATATTTCTATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCAGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGATGATGAGTACTCCATCGGAACCGAGTTGCCTGAAGAAGCCCCAGTTCAAGAGGAGAAGGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGAAATTCAAAAGTTTCACAAGTTAAAGGGGATGATGATGAGGATGATGATGTGGATAGTGTTTCAGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTTCTGCTTCCAGCTTTGGTTTACTTGAGGAGGAGGGAGAGGATGGTGCTGATAATGATGATGAATCTGTGTTAACTGCAGAAAAGGATGACGATGAAGGGGATGATTCTGAAATCAAGTTTTCAGGTAAGAAGTCGTCGTCGAAGTCTTCCAAGAAGAGTGTTTTTTCTGCAGTGTCAGCATTCAGTGCCCTTGATGATGAGGAAGCTGAGGATGTAATTGATAATGAGAACAAAGTTGACGAGGGGATTGATGATGAGCCTGTTATTGCATTTACAGGTAAGAAAAAGTCATCAAAAGGTGCCAAAAAGGGTGTGAATGCATTTTCAGGTTTTAGTGGTCTTGATTATCAGGATGAGGACAGAGATGGTGATAAGGTTGAGGATGAAGATGTTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGGTTCGAAGAAAAGTGGCAATTCGGTTAGTGTAGCATTTGCTGATGAAGATAATGATGGCGATCTTTCTATTTCAGAGCCAAATAAATTACAAAATGATGGTGTTGATGAAGACGATGACAATGTTATTGCGTTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTCCTTTTAGCACATTAAGTGATGAAAATCTGCTGGGCAATGATGTTAAAGATGTATTTGTACCTGAAGTACTTAATTCAGCAAGTAGCAGTTTTGCTTCTGATTTATCTAAAGCTAACAAGACGGAGGGGGTAGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCTACTATATCAAAACCAGCAGACCCTCCTCTTTCTTCACAAGAGGCCAAAGTTGAGAACCCACCTGACCTTGTAACTCCTCCTGATGCATCAGCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAAACGGCTGCAGCTAGGAAGAAGAAAAAGAAAAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGGCAGCAGCTGCTGAAGGGAATGATGAGAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCTATGGCTAGGAGGAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAGGAAGAGAAATTGAGGAAGGAGGAAGAAGAGAGACGGAGGCAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTAAAGAAGAAACAAGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTTCAGGGGGTTTGCCACTGACTGCATCTGACCCTAGTGCACCAACCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCTACCCATCATCAAACAAATGGTAGTGCGCAAACTAAGGTGATGGAACATACAGAAGAAAAGATACAAGAAAAAGATGTGGCAGATTCTGAAATATTGGAGTCTGAGAAGATTGAACCTGTTGAGTCGATGCACGTGGAGGAAAAATCGGATATTATTGAGGCTTCTGAAGATAGTGAAATTAGAAAAGAGGATGAGGATGAGGATGAGGATGAGTGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGATTCAGAGACTGAGAATGGCATGAAAAAGGATGGAAAGAATGGTGCACAAACTTCACGTGATGCAGGTGCCAAGCCAATTGCCCCTGCCCAAAAAAATTTACCTTCTCAGCCTATAAGGTCTCAAGATATTGAAAACAGAAAGAATCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAACGAAAAGATGATGCTGTTAAGAAAAAAATTTCAACATCAGATACTACTACTAAACAACAGGAAGAAAATCTTCGCTCACCCATTTGTTGTATTATGGGCCACGTTGACACTGGTAAAACCAAACTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACGCAGCAGATTGGGGCGACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGATGGTTCCTGGCTTGCTTGTTATTGACACCCCTGGCCACGAATCATTTACAAATTTACGTTCTCGTGGTTCTGGTTTATGTGACCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTAAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAACAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTGAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACCGAGCTGTATTATAAAAATAAGGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCGGACTTGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGAGAACTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGGCCCAATTGTTACTACTATTCGAGCTCTATTGACGCCGCATCCAATGAAGGAGCTCCGAGTGAAGGGTACGTATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAGTCAGTAATGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGCTGGAGTTTTTGAAGAGTCCGGCTGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGCGTAATGCTTGAAAAGAAAAAGGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCCCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATCTATCACTTGTTCGACCAGTTCAAGGCCTACATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAGATTTTACCTAACTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTAATTGATGGCATTGCCAAGGTTGGCACACCAATCTGTATTCCTCAACGAGAATTTATTGAGATTGGTCGCATCGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAGATTGCCATTAAGATTGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGTCAGTCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGTTAGTTTACTTTTCTTCCCTCTCTTTTCCCCTGTTTAA 4176 41.79 MDFILLKRDLITVGGLTFQFGDISMGRKKPTARDDDSAPAAAQGGGKSKKKTFAVDDDEYSIGTELPEEAPVQEEKVVITGKKKGKKGNSKVSQVKGDDDEDDDVDSVSEIVITGKKKGKSKKGGSSSAFSASSFGLLEEEGEDGADNDDESVLTAEKDDDEGDDSEIKFSGKKSSSKSSKKSVFSAVSAFSALDDEEAEDVIDNENKVDEGIDDEPVIAFTGKKKSSKGAKKGVNAFSGFSGLDYQDEDRDGDKVEDEDVTTISFSGKKKKSAKGSKKSGNSVSVAFADEDNDGDLSISEPNKLQNDGVDEDDDNVIAFSGKKKSSKKKSSSPFSTLSDENLLGNDVKDVFVPEVLNSASSSFASDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPDLVTPPDASAEKEAEEESTETAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPDKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASSGGLPLTASDPSAPTKRPKYQTKKSKPTHHQTNGSAQTKVMEHTEEKIQEKDVADSEILESEKIEPVESMHVEEKSDIIEASEDSEIRKEDEDEDEDEWDAKSWDDAVVDLSLKSSFADEELDSETENGMKKDGKNGAQTSRDAGAKPIAPAQKNLPSQPIRSQDIENRKNQPEVEVVDKGKRKDDAVKKKISTSDTTTKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLMVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGELHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVMSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIDGIAKVGTPICIPQREFIEIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRVSLLFFPLFSPV 1391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7299375 7314117 - CmaCh01G010080.1 Cma01g01008 286701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01008 1391 MobiDBLite consensus disorder prediction 362 376 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 602 620 - -
Cma01g01008 1391 Gene3D - 1150 1256 IPR036925 -
Cma01g01008 1391 Gene3D Translation factors 1031 1149 - -
Cma01g01008 1391 Gene3D - 801 1030 IPR027417 -
Cma01g01008 1391 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 808 1024 IPR000795 GO:0003924|GO:0005525
Cma01g01008 1391 Coils Coil 1245 1265 - -
Cma01g01008 1391 Coils Coil 510 577 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 362 805 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 221 344 - -
Cma01g01008 1391 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1133 1262 IPR036925 -
Cma01g01008 1391 SUPERFAMILY Translation proteins 1267 1379 IPR009000 -
Cma01g01008 1391 Coils Coil 446 482 - -
Cma01g01008 1391 Pfam Elongation factor Tu GTP binding domain 812 1020 IPR000795 GO:0003924|GO:0005525
Cma01g01008 1391 PRINTS GTP-binding elongation factor signature 876 886 IPR000795 GO:0003924|GO:0005525
Cma01g01008 1391 PRINTS GTP-binding elongation factor signature 928 937 IPR000795 GO:0003924|GO:0005525
Cma01g01008 1391 PRINTS GTP-binding elongation factor signature 892 903 IPR000795 GO:0003924|GO:0005525
Cma01g01008 1391 PRINTS GTP-binding elongation factor signature 812 825 IPR000795 GO:0003924|GO:0005525
Cma01g01008 1391 MobiDBLite consensus disorder prediction 440 459 - -
Cma01g01008 1391 Gene3D Translation factors 1263 1383 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 642 687 - -
Cma01g01008 1391 PANTHER PHOTOSYSTEM II PROTEIN D1 25 1382 - -
Cma01g01008 1391 Pfam Elongation factor Tu domain 2 1047 1124 IPR004161 GO:0005525
Cma01g01008 1391 MobiDBLite consensus disorder prediction 718 740 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 140 164 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 306 322 - -
Cma01g01008 1391 Pfam Translation-initiation factor 2 1137 1249 IPR023115 -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 390 405 - -
Cma01g01008 1391 CDD aeIF5B_II 1032 1142 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 769 799 - -
Cma01g01008 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1099 IPR027417 -
Cma01g01008 1391 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 25 1382 IPR015760 -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 688 705 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 22 184 - -
Cma01g01008 1391 MobiDBLite consensus disorder prediction 481 594 - -
Cma01g01008 1391 CDD IF2_aeIF5B_IV 1271 1366 - -
Cma01g01008 1391 CDD IF2_eIF5B 811 1021 - -
Cma01g01008 1391 TIGRFAM small_GTP: small GTP-binding protein domain 813 938 IPR005225 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01008 Cma-Chr1:7299375 Cma01g01340 Cma-Chr1:9587798 4.47E-27 dispersed
Cma04g00711 Cma-Chr4:3596550 Cma01g01008 Cma-Chr1:7299375 6.21E-28 transposed
Cma01g01008 Cma-Chr1:7299375 Cma09g01080 Cma-Chr9:5734508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01008 K03243 - zju:107427478 1475.3