Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01012 ATGCTTGGGAACTCCACGACTTCCGTCTTGGGCGGCGGCGCCGGAGAAGACTCTGCCGTACCGGAGACGACAAACCACCAAGATGGGCTCATGGACGATGTGGGTGAGAGCGGGGCAGTGACGGCGGAGGATAATAATAAGACTTCTGGAGAAGATGAGAGAGGGAGAAGTGGCGAAGGAGACAACGGCGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTGGCGCTGTTGAAAATACGGTCGGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAATATCACAAAAGAACCAAAGAAGTTCGATGTGGGAAACCAGATAGTAAAAGTTACAAGTTTTTTGAACAATTAGAAGCTCTTGAAAATCACCCTCCTCTCAATTTCCACTCCCATTTGTCTAAGACTCCACCTCCGGCAACGGCGGCTTCACCTCCAACCACCGTCATTTCTCACATTCCTTCAACTGTTCCATCGACCACCACCGCCGTACCCCACTTGATGAACATATCATTCACTCAACCAAACCCCACAATTCACCTCCAATCCATGCCCCCTCCGCCTCCCTTGTCATTCAATAACCCTACCAGTTTAGCCACCACCATTGCTCCGCTTTTTCAAACCAATGTCTCATCTGGGGCAGCCGGACTGGGGTTTGAAGCGGATCTCATCTCGAACTCATCGTCTGATGATGTCAACTCGTCGACATCATCAGACGAGGCGTCGAGACAGAGAAAGAAGAGGAAATGGAAGGATTTCTTTGAGAGATTGATGAGGGAAGTGATTGAAAGGCAAGAGGAAATGCAAAAGAGATTCTTGGAGGCAATTGAGAAAAGGGAGCAAGAAAGAGTTGCAAGAGAAGAAGCATGGAGGATGCAAGAAATGGCCAAAATCAATAGAGAGAAAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCTAAAGACGCCGCTATTACATCCTTCCTCCAAAAACTAACACAATCCCACCACAACGACAACAACCCGTCACCGTCACCTTCACCGCCACCACCACCGCCACCACCACCACGACAACAACCAATCTCAATATCAAATCCGACAGCAGTCGTGCAACCGCCGCCGCAACAAGCTTCTACATTGCAAGTTGTTCATCCAAATTCTACCCCACAAAAATTGGTGAACAACAATGAATATTTGCACATGGAGATTGTGAAAAGAAGTGATAATGGTGGTGAAAGTTATAGGATGAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTGAGGCACTCATCAAATTGAGAACAAATCTAGACGCCAAATATCAAGAAAATGGACCAAAAGGGCCATTGTGGGAAGAGATATCATCAGCCATGAAGAGACTTGGGTATAATAGAAATGCAAAGAGGTGCAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGACACTAAAAAAACAAGGCCTGAGGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTACAAGGAAAAGAACATCAACAACAACAACAACGGCAACAAGTTCGACAACGTCATAATCGGATCATCGACACAGATTATGCCACATCAACAGCAGCCATTGATGGTTCGACCAGAGCAGCAATGGCCTCCGCAACAAGAACTCGTTCGATCCAACTCAGCCAACAAAGATATGGAGAGCGAACCAATGGATCGAGACGAAAAGGATGAAGACGATGACGAGGATGATGACGAAGAAGAAGACGAGGAGGGTGGAGAGAATTACGAGATTGTGGCAAGCAAGCCAGCTTCGATGAGTGTTGCAGAGTGA 1926 46.68 MLGNSTTSVLGGGAGEDSAVPETTNHQDGLMDDVGESGAVTAEDNNKTSGEDERGRSGEGDNGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRCGKPDSKSYKFFEQLEALENHPPLNFHSHLSKTPPPATAASPPTTVISHIPSTVPSTTTAVPHLMNISFTQPNPTIHLQSMPPPPPLSFNNPTSLATTIAPLFQTNVSSGAAGLGFEADLISNSSSDDVNSSTSSDEASRQRKKRKWKDFFERLMREVIERQEEMQKRFLEAIEKREQERVAREEAWRMQEMAKINREKEILAQERSMAAAKDAAITSFLQKLTQSHHNDNNPSPSPSPPPPPPPPPRQQPISISNPTAVVQPPPQQASTLQVVHPNSTPQKLVNNNEYLHMEIVKRSDNGGESYRMSPASSSSRWPKVEVEALIKLRTNLDAKYQENGPKGPLWEEISSAMKRLGYNRNAKRCKEKWENINKYFKKVKDTKKTRPEDSKTCPYFHQLDALYKEKNINNNNNGNKFDNVIIGSSTQIMPHQQQPLMVRPEQQWPPQQELVRSNSANKDMESEPMDRDEKDEDDDEDDDEEEDEEGGENYEIVASKPASMSVAE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7366076 7369287 - CmaCh01G010120.1 Cma01g01012 286705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01012 641 Pfam Myb/SANT-like DNA-binding domain 70 156 IPR044822 -
Cma01g01012 641 Pfam Myb/SANT-like DNA-binding domain 452 539 IPR044822 -
Cma01g01012 641 MobiDBLite consensus disorder prediction 46 61 - -
Cma01g01012 641 MobiDBLite consensus disorder prediction 363 422 - -
Cma01g01012 641 ProSiteProfiles Myb-like domain profile. 446 510 IPR001005 -
Cma01g01012 641 MobiDBLite consensus disorder prediction 371 390 - -
Cma01g01012 641 Gene3D - 454 515 - -
Cma01g01012 641 Gene3D - 72 133 - -
Cma01g01012 641 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 25 633 - -
Cma01g01012 641 PANTHER - 25 633 - -
Cma01g01012 641 SMART sant 450 512 IPR001005 -
Cma01g01012 641 SMART sant 68 130 IPR001005 -
Cma01g01012 641 MobiDBLite consensus disorder prediction 578 595 - -
Cma01g01012 641 CDD GT1 70 135 - -
Cma01g01012 641 CDD GT1 452 517 - -
Cma01g01012 641 ProSiteProfiles Myb-like domain profile. 70 128 IPR001005 -
Cma01g01012 641 Coils Coil 297 317 - -
Cma01g01012 641 MobiDBLite consensus disorder prediction 261 283 - -
Cma01g01012 641 MobiDBLite consensus disorder prediction 603 625 - -
Cma01g01012 641 MobiDBLite consensus disorder prediction 391 422 - -
Cma01g01012 641 MobiDBLite consensus disorder prediction 578 641 - -
Cma01g01012 641 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01012 Cma-Chr1:7366076 Cma09g01077 Cma-Chr9:5686463 0 dispersed
Cma02g00969 Cma-Chr2:5785720 Cma01g01012 Cma-Chr1:7366076 2.57E-125 dispersed
Cma11g00987 Cma-Chr11:5251665 Cma01g01012 Cma-Chr1:7366076 2.87E-06 dispersed
Cma01g01011 Cma-Chr1:7341263 Cma01g01012 Cma-Chr1:7366076 1.99E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34308 PF13837 Myb_DNA-bind_4 1.30E-21 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01012 - - cpep:111787713 875.159