Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01013 | ATGTCATTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTACCTGGTCACCATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGTCCAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCCGAGTTCTCTGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGCCCGGGACTCGCGATGGAACGATGCAATGCTTCATTAAGAGGGACAAATCTAATTTGACATACCACCTTTACCTTTGCCTTAGTACTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAACGACTTGCACTGAGTACATGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCGAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCCCCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAGTCTCCTATGAGCTGAACGTTCTTGGCACTAGAGGCCCCCGAAAGATGCATTGCACAATGCACTCCATCCCCATCTCATGTCTTGAGCCCGGTGGCACTGTTCCTGGCCAGCCCCAAGTCGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGTATTAAACTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTCACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAATAAGCCACCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGGGGACGAGTAACCGTTGCATCTGTTAAAAACTTCCAACTGATCGCTTCAACAGAGGCTTCTTCTTCTACAGCTACAAACCAACACGCACAATCTTCCCAGTCCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCTGCATTTCAAGCTTTTGCTATCTGTTTGAGTAGCTTTGACACCAAGTTGGCTTGTGAATAA | 1281 | 45.82 | MSFRSIVRDVREGFGSLSRRSFEFRLPGHHRGKSHGSVHDLLDQPLVIQSSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSTALLVDNGKFLLSAKRTRRTTCTEYMISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQVSYELNVLGTRGPRKMHCTMHSIPISCLEPGGTVPGQPQVVTRLLGDSFRSISFSKSVLNSTEFSSSRFSDIVGSRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTEASSSTATNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7423924 | 7427559 | + | CmaCh01G010130.1 | Cma01g01013 | 286706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01013 | 426 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
Cma01g01013 | 426 | ProSitePatterns | Tub family signature 1. | 346 | 359 | IPR018066 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 328 | 345 | IPR000007 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 346 | 362 | IPR000007 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 383 | 402 | IPR000007 | - | |
Cma01g01013 | 426 | PRINTS | Tubby superfamily signature | 404 | 426 | IPR000007 | - | |
Cma01g01013 | 426 | Gene3D | - | 48 | 100 | - | - | |
Cma01g01013 | 426 | Pfam | F-box domain | 53 | 100 | IPR001810 | GO:0005515 | |
Cma01g01013 | 426 | PANTHER | TUBBY-RELATED | 1 | 426 | - | - | |
Cma01g01013 | 426 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 426 | IPR025659 | - | |
Cma01g01013 | 426 | ProSitePatterns | Tub family signature 2. | 411 | 426 | IPR018066 | - | |
Cma01g01013 | 426 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 426 | - | - | |
Cma01g01013 | 426 | Pfam | Tub family | 114 | 421 | IPR000007 | - | |
Cma01g01013 | 426 | Gene3D | Tubby Protein; Chain A | 110 | 426 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01013 | Cma-Chr1:7423924 | Cma04g02451 | Cma-Chr4:16853307 | 0 | dispersed | |
Cma17g00306 | Cma-Chr17:1640574 | Cma01g01013 | Cma-Chr1:7423924 | 4.99E-143 | dispersed | |
Cma01g01013 | Cma-Chr1:7423924 | Cma15g00596 | Cma-Chr15:2826436 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34309 | PF01167 | Tub | 5.70E-118 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01013 | K19600 | - | csv:101206041 | 790.03 |