Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01013 ATGTCATTTCGTAGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTACCTGGTCACCATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGTCCAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCCGAGTTCTCTGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGCCCGGGACTCGCGATGGAACGATGCAATGCTTCATTAAGAGGGACAAATCTAATTTGACATACCACCTTTACCTTTGCCTTAGTACTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAACGACTTGCACTGAGTACATGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGGTCGAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCCCCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAGTCTCCTATGAGCTGAACGTTCTTGGCACTAGAGGCCCCCGAAAGATGCATTGCACAATGCACTCCATCCCCATCTCATGTCTTGAGCCCGGTGGCACTGTTCCTGGCCAGCCCCAAGTCGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGTATTAAACTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTCACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAATAAGCCACCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGGGGACGAGTAACCGTTGCATCTGTTAAAAACTTCCAACTGATCGCTTCAACAGAGGCTTCTTCTTCTACAGCTACAAACCAACACGCACAATCTTCCCAGTCCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCTGCATTTCAAGCTTTTGCTATCTGTTTGAGTAGCTTTGACACCAAGTTGGCTTGTGAATAA 1281 45.82 MSFRSIVRDVREGFGSLSRRSFEFRLPGHHRGKSHGSVHDLLDQPLVIQSSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQPGTRDGTMQCFIKRDKSNLTYHLYLCLSTALLVDNGKFLLSAKRTRRTTCTEYMISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQVSYELNVLGTRGPRKMHCTMHSIPISCLEPGGTVPGQPQVVTRLLGDSFRSISFSKSVLNSTEFSSSRFSDIVGSRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTEASSSTATNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7423924 7427559 + CmaCh01G010130.1 Cma01g01013 286706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01013 426 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cma01g01013 426 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cma01g01013 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cma01g01013 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cma01g01013 426 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cma01g01013 426 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cma01g01013 426 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cma01g01013 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Cma01g01013 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Cma01g01013 426 Gene3D - 48 100 - -
Cma01g01013 426 Pfam F-box domain 53 100 IPR001810 GO:0005515
Cma01g01013 426 PANTHER TUBBY-RELATED 1 426 - -
Cma01g01013 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Cma01g01013 426 ProSitePatterns Tub family signature 2. 411 426 IPR018066 -
Cma01g01013 426 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 426 - -
Cma01g01013 426 Pfam Tub family 114 421 IPR000007 -
Cma01g01013 426 Gene3D Tubby Protein; Chain A 110 426 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01013 Cma-Chr1:7423924 Cma04g02451 Cma-Chr4:16853307 0 dispersed
Cma17g00306 Cma-Chr17:1640574 Cma01g01013 Cma-Chr1:7423924 4.99E-143 dispersed
Cma01g01013 Cma-Chr1:7423924 Cma15g00596 Cma-Chr15:2826436 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34309 PF01167 Tub 5.70E-118 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01013 K19600 - csv:101206041 790.03