Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01016 ATGTCGTCGGCACCGTCTTCAAGTCAACCGGAGTTTGATTACTTGTTTAAGTTGCTGTTGATTGGGGACTCTGGAGTTGGGAAGAGTACGCTTCTTTTGCGATTCACTTCTGATTCATTTGAGGAACTTTCTCCGACTATTGGTGTGGATTTCAAGATTAAGCATGTTACAGTTGGGGGAAAGAAGTTGAAGCTTGCAATATGGGACACAGCTGGGCAGGAGAGGTTTCGAACATTAACAGGTTCATATTACAGAGGCGCTCAAGGAATCATTATGGTGTATGATGTGACCCGCCGTGAGACATTCACAAATCTCTCTGACATATGGGCTAAAGAAATTGACCTGTACTCAACAAATCAGGATTGCATCAAGATGCTTGTTGGAAACAAAGTGGATAAGGAAAGTGAAAGGGTAGTCAGTAAAAAAGAGGGAATCGACTTTGCTCGAGAATATGGATGCCTATTTCTTGAATGTAGCGCAAAAACTCGAGTCAATGTGGAACAATGCTTTGATGAGCTTGTGTTAAAGATTTTGGATACGCCCAGTCTTTTGGCTGATGGCTCAACAGGTTTGAAAAAGAACATCTTCAAAGAGAAACCTCCTCAAGAGAACGCATCAGCCGGTGGCTGCTGCTCATATTGA 642 42.83 MSSAPSSSQPEFDYLFKLLLIGDSGVGKSTLLLRFTSDSFEELSPTIGVDFKIKHVTVGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFDELVLKILDTPSLLADGSTGLKKNIFKEKPPQENASAGGCCSY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7457018 7462001 + CmaCh01G010160.1 Cma01g01016 286709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01016 213 ProSiteProfiles small GTPase Ras family profile. 8 213 IPR001806 GO:0003924|GO:0005525
Cma01g01016 213 Gene3D - 9 211 IPR027417 -
Cma01g01016 213 PANTHER LD21953P-RELATED 7 212 - -
Cma01g01016 213 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Cma01g01016 213 TIGRFAM small_GTP: small GTP-binding protein domain 14 173 IPR005225 GO:0005525
Cma01g01016 213 SMART ran_sub_2 21 213 - -
Cma01g01016 213 CDD Rab18 16 177 - -
Cma01g01016 213 PANTHER BNAA05G18680D PROTEIN 7 212 - -
Cma01g01016 213 ProSiteProfiles small GTPase Rab1 family profile. 11 211 - -
Cma01g01016 213 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Cma01g01016 213 SMART ras_sub_4 13 180 - -
Cma01g01016 213 PRINTS Transforming protein P21 ras signature 16 37 - -
Cma01g01016 213 PRINTS Transforming protein P21 ras signature 38 54 - -
Cma01g01016 213 PRINTS Transforming protein P21 ras signature 56 78 - -
Cma01g01016 213 PRINTS Transforming protein P21 ras signature 120 133 - -
Cma01g01016 213 PRINTS Transforming protein P21 ras signature 155 177 - -
Cma01g01016 213 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Cma01g01016 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 186 IPR027417 -
Cma01g01016 213 SMART rab_sub_5 16 180 - -
Cma01g01016 213 SMART arf_sub_2 4 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01016 K07910 RAB18; Ras-related protein Rab-18 - csv:101216584 420.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01016 Cma-Chr1:7457018 Cma02g00636 Cma-Chr2:3838257 1.88E-129 dispersed
Cma01g01016 Cma-Chr1:7457018 Cma20g01059 Cma-Chr20:7968280 2.12E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1182 . . . . . . . . . . Cma01g01016 . Car01g00897 . . . . Bhi04g02196 . . . . . . . . . . . . . . . Cone17ag0804 Cone20ag0409 . . . . . . . . . . . . . Cmo01g01058 . . . . . . Cpe02g00861 . . . . . . . . . . . . . . . . Chy03g00809 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01016 Cma_Chr01 FPKM 31.056765 32.441597 33.93248 33.29921 23.186518 19.535034 27.120722 48.882828 55.206039 61.807209