Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01018 ATGCCGTCTTCCGGTGTTTCAGCCTTGGATTCAGAAGAAGAAGGCAGGTCGAATGTGGGTAAAACAAAGGAGAACCCCAGCTTCTTTGATATATATGGAACCGATGCCAAAGCTGAGATTCTTTTCAAAACTCCCGAGTCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGGGCTTGTAACTTGGGTGCTTGCTGAAGGTTTCATGCCATCATGGGTTTTCATTAAGAATAAACCCCTGATCCCCAAAGTGGTTATGGTTTATCTCCCTGGCCTGGATGCTGCTCTGTACATGTCACAGACCAAGATACTTCCTACGTTTAAAAAATTATGCGGCAATCCGAGGGCAGTTTTAGCTCTTAGCTGTATATCAGATAGAATGCAAACAATTGATGCACTTTTGACATGTAAGGTGAAGAGAAAGAGGGATGCAAATAGTGTAGACTTAAAGAATAATTTGACGTCTGAACAAGAAAGATTTGGCCCTGAAAAAGAAACACCGATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACGCTAACTGCAAAAGAACTGGAAGACAATGGCTATCCTTTCAATCAACCAGGTTTTATACATACACTTCCTGCTCCTATTGGATCTTCACCTTATGAAATGTTGGCGCTTGACTGTGAAATGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGATATGGAAGGACAGGTTGTCCTTGACAAATTGGTAAAACCATCAAATGCAATTGTTGATTACAATACGAGGTTTAGTGGAATTACATTTGAGATGTTAAGTCAGGTGACCACTAGTCTGGAAGATGTTCAGAAAGTTTTTTTGAATCTAGTTCACAAGGAGACCGTTCTAATTGGTCATTCACTGGAGAATGACCTGATGGCATTAAAGATCTCTCATGATCTGGTGATTGATACTGCAGTACTGTATAAGCATCCCCGTGGCGGCTCTCATAAATCTGCCCTTCGAATCCTTACCAAAAAATTTCTTTCCAGGGAGATACAACAATCTGGCAATGGCCATGATAGTATTGAAGATGCAAGAGCTACTATGGAACTTGCACTTCTTAAAATTAAACATGGACCCGAGTTTGGTTCACCTCCATCATTAATCAGGAAAAAACTACTTACTATACTTGGTGAGAATGGAAAGACGTCTTCTTTCATCGATGATGTTTCAACAGTGAAGCGATATTCCTCAGAATCATCGCATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCCAGGGCGAAAAAAGAGGTAATGAATGAAAGAGTACACTTCATATGGACACAATTTTCGGAATTGAATTCTTACCATAAGAAGCAAGTAGATGATGAAGAAAGATTGAATGTCAAGCTTGCAGAGTTATTGTCATTACTTACATGTGATTCAAAATCTGTAAACAAGAAAAGGAACAGCCGCAAAATCTCTGTTGAACTACGGGAAATTTTGAGCCGCATGGATTCCAGAATCAAGGACCTTTATACCTCGTTACCTACTAATGCTATGCTTATTGTTTGCACTGGTCACGGTGACATAGCACTTGTACAGAGATTGAGGAAAATGCTAAAGGAGCAAAGTGAAACAATGATATCCCGTGAGAAGATTGTCAAAATCTTGGAAGACCTCCATGCCCAAGCTGAAGTAGCTCTCTGTTTTGCTTCTATAAAGCATTCATCAGTACTCTAA 1731 39.98 MPSSGVSALDSEEEGRSNVGKTKENPSFFDIYGTDAKAEILFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQTKILPTFKKLCGNPRAVLALSCISDRMQTIDALLTCKVKRKRDANSVDLKNNLTSEQERFGPEKETPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIHTLPAPIGSSPYEMLALDCEMCVTCEGFELTRITLVDMEGQVVLDKLVKPSNAIVDYNTRFSGITFEMLSQVTTSLEDVQKVFLNLVHKETVLIGHSLENDLMALKISHDLVIDTAVLYKHPRGGSHKSALRILTKKFLSREIQQSGNGHDSIEDARATMELALLKIKHGPEFGSPPSLIRKKLLTILGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKEVMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVELREILSRMDSRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMISREKIVKILEDLHAQAEVALCFASIKHSSVL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7469123 7480029 - CmaCh01G010180.1 Cma01g01018 286711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01018 576 Pfam Exonuclease 219 365 IPR013520 -
Cma01g01018 576 Gene3D - 214 375 IPR036397 GO:0003676
Cma01g01018 576 SMART exoiiiendus 216 375 IPR013520 -
Cma01g01018 576 MobiDBLite consensus disorder prediction 1 22 - -
Cma01g01018 576 PANTHER LD29573P 20 556 - -
Cma01g01018 576 CDD REX1_like 218 367 IPR034922 -
Cma01g01018 576 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 556 - -
Cma01g01018 576 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01018 K14570 REX1, REXO1, REXO5, RNH70; RNA exonuclease [EC:3.1.-.-] - csv:101215617 1010.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01018 Cma05g00312 CCT
Cma01g01018 Cma12g00404 CCT
Cma01g01018 Cma12g00404 ECH
Cma01g01018 Cma05g00312 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01018 Cma-Chr1:7469123 Cma03g00956 Cma-Chr3:6815832 3.92E-29 dispersed
Cma01g01018 Cma-Chr1:7469123 Cma09g01070 Cma-Chr9:5623123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1130 Blo01g01603 Blo12g01115 Bda01g00478 . . . . . Cmo05g00314 Cmo12g00355 Cma01g01018 . Car01g00899 Car12g00381 Sed11g1094 . Cpe07g00360 Bhi04g00141 Tan02g2081 Cmetu03g1137 . Hepe10g0160 . Lcy13g1907 Cla08g01417 Cam08g1895 Cec08g1473 Cco08g1606 Clacu08g1588 . Cre08g1372 Cone4ag1978 . Cone17ag1410 Cone20ag0072 . . Chy04g00409 Cme03g00439 . Blo18g00229 . Bda13g01547 . . . Bma02g00291 . Cmo01g01060 . Cma12g00404 Cma05g00312 Car05g00808 Car09g00086 Cpe11g00260 Cpe02g00066 . . . . . . . . . . . . . . Lsi08g00283 Csa02g02140 Chy03g01379 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009337 0 1 1 1 0 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 2 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01018 Cma_Chr01 FPKM 4.867066 6.31904 3.540856 5.333951 7.666797 4.99613 7.241567 7.396601 7.333603 9.201896