Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01019 | ATGGTGCCTTCGGGGCCATCCACTCCCATTGGTGGTGCGCAGTCTGTTTCACCATCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCTCCACGAACTCAGTTTAGTAGTATGAATATGCTTGGTAATATGCCCAGTATGTCTTCTCTCCTTAATCAGTCATTTGGAAATGGAGTTCCAAATTCTGGGCCCTCAGGTCTTGGAAACAGCCAACGAGGAAGTATGGACCCTGGTTCCGAGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAATAGTACTCCATCATCATTAGTGGCATCAAATACAGGAAACCCTGCTTCATCTAGTCAAGTTTCAGGGCCACAATTTTCAAACCATTCTAGCAGCCAAATAATACCCAATCAACAGCAGCCCCAGCAAATTGAGCCCCAGAACTTCCAACATAGTCAGCATTCAATGCAACAGTTCGTTAGCTCCAATAATGCACAGCAGTCACAGCAGCAGCAACAGCAACAACAACAACATCAATTCCAACCTATACGAGGAAGCTTATGTGGTGTTGGACCTGTCAAGTTAGAGTCTCAAATGAATAATAATGATATTCAGGGGCAGCAACTACAGCAGCAGCAGCTGCAGTCAATGAGGAACCTTGGTCCTGTGAAACTGGAACCTCAACAACTTCAATCAATGAGAAACTTGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCATTGTTTCTACAGCAGCAACATCAACATCAACAGCAGCAACAACAACAGCAGTTGCTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCTGCGCAGATTAATCTTTTGCAACAACAAAGGCTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATTCCTCAACAAAGACCGCATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAACCAGTTTATGAACCTGGCATGTGTGCTCGGCGTTTAACAAATTATATGTGTCAACAGCAGCAGAGACCTGAAGACAACAATATTGCATTCTGGAGGAAATTTGTTGCGGATTACTTTGCTCCACATGCCAAAAAGAAATGGTGTGTCTCCATGTATGGAAATGGACGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCAACCTTTGAAGTTCTTCCAAGGCTGTTCAAAATTAAGTATGAAAGTGGAACTCTTGAAGAACTTCTCTATATTGATATGCCCCGCGAATATCATAATTCCTCTGGACAAATTGTCCTAGATTACGCCAAAGCAATACAAGAAAGTGTGTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTTCGGATAGTTTTTTCTCCGGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTACTAATACCTCAGGTTAGTCAGCTGGGGGCAGCTGCTCAGAAGTATCAGACTGCTATTCAAAAGGCATCATCTAACTTGTCTACTCCAGAGTTGCAAAATAACTGTAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATATGTCCGGTGCCTTCAGATATCAGAAGTCGTCAATAGTATGAAGGACTTGATAGATTACAGTCGAGAAACTTCGACAGGGCCAATTGAGAGTTTGGCCAAGTTTCCACGGAAGACAAACGCTTCACCAGGATTCCTCAGCCAAGCTCAAAACACTGAGCAACAATTACCTCAACCCCAGCAAACAATTGATCAAAACACAAACGGCGACCAAAGCTCTGTTCCGGCTGCTGCTAACAATGGTGTTCCAAATGCAAGTAACCCCTCGAATCCAGCATCAACATCATCTCCTGCTAGTACCATTGTTGGGTTACTCCACCAGAATTCCATGAACTCCAGACAGCAGAACTCTATCAACAGTGCTGGAAGCCCTTATGCCGGGAATTCTGTGCAAATATCGTCCCCAGGTTCCTCCACCACGATTGCTCAGGCACAAGCAAATCCCTCCTTCCATTCGCCTACATTGTCCTCATCTAACAATCCTCCGCAATCATCAATTGGAACTGCAACTAATCACGTAAGTGCCACAAACTCTCCGGTAAATGTTCCCTTGCAACAGCCAACACTCTCTTCTGAAGCCGATCAATCGGATTCCCAGAGCTCCATGCAAAAGATTATTCAGGAATACATGATGTCAAACCAACTGAACGGGATGAACACAATGACTGGTGTTTCCTCTCTAGCAGAGGATGTGAAACCTGTTAATGGGATGTTGCCAGCAAACAACATCATGAGTCTCAATGGACGGAACTGCCTGGTCGGGAGTGGAACTGCCAATGGTGTTTCTGGTATCAGGAGCATGGGGTATGGCTCGATGGGTGGTGGAGGACTTGCTCAGGCTTCTATGGTCAATGGAGTGAAGTCTGCAATGGGAAGTAACTCGATTTCTAACGGGAGAATCGGGATGGCGTCATTGGCTCGAGAACAGAGCATAAATCATCAAGATTTGGGAGACCAGCTCCTTAATGGTCTGGGAGCAGTGAATGGGTTTAATAATCTTCAATTTGATTACTGA | 2718 | 44.81 | MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSSMNMLGNMPSMSSLLNQSFGNGVPNSGPSGLGNSQRGSMDPGSESDPFSLVGNGVNFNSTPSSLVASNTGNPASSSQVSGPQFSNHSSSQIIPNQQQPQQIEPQNFQHSQHSMQQFVSSNNAQQSQQQQQQQQQHQFQPIRGSLCGVGPVKLESQMNNNDIQGQQLQQQQLQSMRNLGPVKLEPQQLQSMRNLGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQLLSMSRQSSQAAAAAQINLLQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKPVYEPGMCARRLTNYMCQQQQRPEDNNIAFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYIDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQKASSNLSTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETSTGPIESLAKFPRKTNASPGFLSQAQNTEQQLPQPQQTIDQNTNGDQSSVPAAANNGVPNASNPSNPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSVQISSPGSSTTIAQAQANPSFHSPTLSSSNNPPQSSIGTATNHVSATNSPVNVPLQQPTLSSEADQSDSQSSMQKIIQEYMMSNQLNGMNTMTGVSSLAEDVKPVNGMLPANNIMSLNGRNCLVGSGTANGVSGIRSMGYGSMGGGGLAQASMVNGVKSAMGSNSISNGRIGMASLAREQSINHQDLGDQLLNGLGAVNGFNNLQFDY | 905 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7481980 | 7496017 | - | CmaCh01G010190.1 | Cma01g01019 | 286712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 603 | 666 | - | - | |
Cma01g01019 | 905 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 1 | 905 | - | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 64 | 188 | - | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 8 | 41 | - | - | |
Cma01g01019 | 905 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 1 | 905 | IPR029005 | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 64 | 93 | - | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 678 | 769 | - | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 609 | 666 | - | - | |
Cma01g01019 | 905 | Pfam | LIM-domain binding protein | 346 | 600 | IPR029005 | - | |
Cma01g01019 | 905 | MobiDBLite | consensus disorder prediction | 100 | 188 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01019 | Cma-Chr1:7481980 | Cma15g00631 | Cma-Chr15:2982340 | 0 | dispersed | |
Cma01g01019 | Cma-Chr1:7481980 | Cma09g01067 | Cma-Chr9:5608108 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01019 | - | - | csv:101221714 | 1313.52 |