Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01019 ATGGTGCCTTCGGGGCCATCCACTCCCATTGGTGGTGCGCAGTCTGTTTCACCATCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCTCCACGAACTCAGTTTAGTAGTATGAATATGCTTGGTAATATGCCCAGTATGTCTTCTCTCCTTAATCAGTCATTTGGAAATGGAGTTCCAAATTCTGGGCCCTCAGGTCTTGGAAACAGCCAACGAGGAAGTATGGACCCTGGTTCCGAGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAATAGTACTCCATCATCATTAGTGGCATCAAATACAGGAAACCCTGCTTCATCTAGTCAAGTTTCAGGGCCACAATTTTCAAACCATTCTAGCAGCCAAATAATACCCAATCAACAGCAGCCCCAGCAAATTGAGCCCCAGAACTTCCAACATAGTCAGCATTCAATGCAACAGTTCGTTAGCTCCAATAATGCACAGCAGTCACAGCAGCAGCAACAGCAACAACAACAACATCAATTCCAACCTATACGAGGAAGCTTATGTGGTGTTGGACCTGTCAAGTTAGAGTCTCAAATGAATAATAATGATATTCAGGGGCAGCAACTACAGCAGCAGCAGCTGCAGTCAATGAGGAACCTTGGTCCTGTGAAACTGGAACCTCAACAACTTCAATCAATGAGAAACTTGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCATTGTTTCTACAGCAGCAACATCAACATCAACAGCAGCAACAACAACAGCAGTTGCTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCTGCGCAGATTAATCTTTTGCAACAACAAAGGCTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATTCCTCAACAAAGACCGCATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAACCAGTTTATGAACCTGGCATGTGTGCTCGGCGTTTAACAAATTATATGTGTCAACAGCAGCAGAGACCTGAAGACAACAATATTGCATTCTGGAGGAAATTTGTTGCGGATTACTTTGCTCCACATGCCAAAAAGAAATGGTGTGTCTCCATGTATGGAAATGGACGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCAACCTTTGAAGTTCTTCCAAGGCTGTTCAAAATTAAGTATGAAAGTGGAACTCTTGAAGAACTTCTCTATATTGATATGCCCCGCGAATATCATAATTCCTCTGGACAAATTGTCCTAGATTACGCCAAAGCAATACAAGAAAGTGTGTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTTCGGATAGTTTTTTCTCCGGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTACTAATACCTCAGGTTAGTCAGCTGGGGGCAGCTGCTCAGAAGTATCAGACTGCTATTCAAAAGGCATCATCTAACTTGTCTACTCCAGAGTTGCAAAATAACTGTAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATATGTCCGGTGCCTTCAGATATCAGAAGTCGTCAATAGTATGAAGGACTTGATAGATTACAGTCGAGAAACTTCGACAGGGCCAATTGAGAGTTTGGCCAAGTTTCCACGGAAGACAAACGCTTCACCAGGATTCCTCAGCCAAGCTCAAAACACTGAGCAACAATTACCTCAACCCCAGCAAACAATTGATCAAAACACAAACGGCGACCAAAGCTCTGTTCCGGCTGCTGCTAACAATGGTGTTCCAAATGCAAGTAACCCCTCGAATCCAGCATCAACATCATCTCCTGCTAGTACCATTGTTGGGTTACTCCACCAGAATTCCATGAACTCCAGACAGCAGAACTCTATCAACAGTGCTGGAAGCCCTTATGCCGGGAATTCTGTGCAAATATCGTCCCCAGGTTCCTCCACCACGATTGCTCAGGCACAAGCAAATCCCTCCTTCCATTCGCCTACATTGTCCTCATCTAACAATCCTCCGCAATCATCAATTGGAACTGCAACTAATCACGTAAGTGCCACAAACTCTCCGGTAAATGTTCCCTTGCAACAGCCAACACTCTCTTCTGAAGCCGATCAATCGGATTCCCAGAGCTCCATGCAAAAGATTATTCAGGAATACATGATGTCAAACCAACTGAACGGGATGAACACAATGACTGGTGTTTCCTCTCTAGCAGAGGATGTGAAACCTGTTAATGGGATGTTGCCAGCAAACAACATCATGAGTCTCAATGGACGGAACTGCCTGGTCGGGAGTGGAACTGCCAATGGTGTTTCTGGTATCAGGAGCATGGGGTATGGCTCGATGGGTGGTGGAGGACTTGCTCAGGCTTCTATGGTCAATGGAGTGAAGTCTGCAATGGGAAGTAACTCGATTTCTAACGGGAGAATCGGGATGGCGTCATTGGCTCGAGAACAGAGCATAAATCATCAAGATTTGGGAGACCAGCTCCTTAATGGTCTGGGAGCAGTGAATGGGTTTAATAATCTTCAATTTGATTACTGA 2718 44.81 MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSSMNMLGNMPSMSSLLNQSFGNGVPNSGPSGLGNSQRGSMDPGSESDPFSLVGNGVNFNSTPSSLVASNTGNPASSSQVSGPQFSNHSSSQIIPNQQQPQQIEPQNFQHSQHSMQQFVSSNNAQQSQQQQQQQQQHQFQPIRGSLCGVGPVKLESQMNNNDIQGQQLQQQQLQSMRNLGPVKLEPQQLQSMRNLGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQLLSMSRQSSQAAAAAQINLLQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKPVYEPGMCARRLTNYMCQQQQRPEDNNIAFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYIDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQKASSNLSTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETSTGPIESLAKFPRKTNASPGFLSQAQNTEQQLPQPQQTIDQNTNGDQSSVPAAANNGVPNASNPSNPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSVQISSPGSSTTIAQAQANPSFHSPTLSSSNNPPQSSIGTATNHVSATNSPVNVPLQQPTLSSEADQSDSQSSMQKIIQEYMMSNQLNGMNTMTGVSSLAEDVKPVNGMLPANNIMSLNGRNCLVGSGTANGVSGIRSMGYGSMGGGGLAQASMVNGVKSAMGSNSISNGRIGMASLAREQSINHQDLGDQLLNGLGAVNGFNNLQFDY 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7481980 7496017 - CmaCh01G010190.1 Cma01g01019 286712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01019 905 MobiDBLite consensus disorder prediction 603 666 - -
Cma01g01019 905 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 905 - -
Cma01g01019 905 MobiDBLite consensus disorder prediction 1 41 - -
Cma01g01019 905 MobiDBLite consensus disorder prediction 64 188 - -
Cma01g01019 905 MobiDBLite consensus disorder prediction 8 41 - -
Cma01g01019 905 PANTHER LIM DOMAIN-BINDING PROTEIN 1 905 IPR029005 -
Cma01g01019 905 MobiDBLite consensus disorder prediction 64 93 - -
Cma01g01019 905 MobiDBLite consensus disorder prediction 678 769 - -
Cma01g01019 905 MobiDBLite consensus disorder prediction 609 666 - -
Cma01g01019 905 Pfam LIM-domain binding protein 346 600 IPR029005 -
Cma01g01019 905 MobiDBLite consensus disorder prediction 100 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01019 Cma-Chr1:7481980 Cma15g00631 Cma-Chr15:2982340 0 dispersed
Cma01g01019 Cma-Chr1:7481980 Cma09g01067 Cma-Chr9:5608108 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01019 - - csv:101221714 1313.52