Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01026 ATGAATTTGACTGTGGTGGGAAGCGATGTGACGAACGGTTCGGATATATTTTCGTGTGGGTACAGCTTCGTGGTGGAGGAGGGTGAGTTCAGGTTCTCGCCGGCTTATGTTCCACACTTCCCGAACGCCACAGTGCCCATGGTGTTGGAGTGGTCCATCGGCAATGAGTCGTGTGAGGCGGCTGCGGGCAGCCAAGGGTTTGCGTGTCAGGGAAATAGTAGCTGCCTGAACCCTGGTTTCATGGGGGGCTACCGCTGCAACTGCTTGCAGGGATTCACTGGGAATCCATATTTGCCACATGTTGGGTGCCGAGACATAAATGAATGTGATGATCCAAATGAAAATGAGTGTACGGATATATGTATAAATACGGTAGGAGGTTATCGATGTGAATGCCCAAATGGATACTCCGGCAGTGGCAGAAAGGATAGCAATGGCTGTGTTCCCCGCCGCCGGTTTCATACTCTCATATTAGTTTCTGGTATCGCGCTGGCAGTAATGGGTGTGCTTGTAAGTTCCTCCTGGTTCTTCATCGGCTTCAAGAGATGGAAGCTCATCAAACTCAAAGCTAATTTCTTCGAACGAAACGGCGGATTAATGTTAGAGCAACAGCTTTCAATCCGCGATGAAGCCAACCAAACTGCAAAGATCTTCACCGCAGAGGAATTACGGAAAGCCACTAACAACTACTCCGACGACCGAATCGTCGGCAAAGGTGGCTTCGGAACCGTCTACAAAGGCATCCTCCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGGTTGTCGACAACGTTCAAAACAAGCAGTTCATCAACGAAGTCATCGTCCTCTCGCAGATCAATCACCGCAACACAGTCAAACTCTTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCCCCAACGGTACGCTCTTCGATCACATCCACAAGCGAAAATCGCCGCGGCCGATTCCTTGGAAGATCCGCCTTAAAATCGCATCGGAAACCGCTGGAGTTCTCTCCTATCTTCACTCATCGGCCTCGATTCCGATAATTCACAGAGATGTGAAGTCCACGAACATTCTCCTCGATGAAAATTACACCGCGAAGGTCTCCGATTTCGGTGCTTCGAAGTTAGTTCCCTTGGATCAGGTCGATTTGAACACAATCGTGCAAGGAACTCTCGGATACCTAGATCCAGAGTATCTGCAAACCAGTCAATTAACAGAGAAGAGCGACGTGTACAGTTTCGGCGTTGTTCTCGTCGAATTAATGACCGGAAAAGTTCCTCTATCCTTCAGCCGATCAGAGGAAGAACGGAATCTGTCGATGTACTTTCTAATTGCTCTGAAACAGAATCGGCTCAGAGAAATCTTAGATAAAAACTTGGGCAGCGATGTGGAGTACGAGCAGCTGAAGGAAGTTGCGAGCCTTGCGAAGAGGTGTTTGAAAGTGAAAGGGGAAGAAAGGCCGACAATGAAGGAGGTCGCTGCAGAGCTTGAAGGCTTGTTTCATATGGCGTTTGGTCATCCATGGATGGTTGATGATAAATCTCCATTAGTTGAAGAATCAGAGGCTTTGGTGAGTGAAGAAAAGGAAAAGCAGAAGGAAGATCGTGTTGATTCTGTTCGTCGCGAGGTTGAATCTGGAACTGAGTGTACGGAAGGGAGTAACCGATATGATAGCTTTCCCACTCACCAAATGATACCAAAAGCAGATTCTGGGAGATAA 1731 48.41 MNLTVVGSDVTNGSDIFSCGYSFVVEEGEFRFSPAYVPHFPNATVPMVLEWSIGNESCEAAAGSQGFACQGNSSCLNPGFMGGYRCNCLQGFTGNPYLPHVGCRDINECDDPNENECTDICINTVGGYRCECPNGYSGSGRKDSNGCVPRRRFHTLILVSGIALAVMGVLVSSSWFFIGFKRWKLIKLKANFFERNGGLMLEQQLSIRDEANQTAKIFTAEELRKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKVVDNVQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVPNGTLFDHIHKRKSPRPIPWKIRLKIASETAGVLSYLHSSASIPIIHRDVKSTNILLDENYTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKVPLSFSRSEEERNLSMYFLIALKQNRLREILDKNLGSDVEYEQLKEVASLAKRCLKVKGEERPTMKEVAAELEGLFHMAFGHPWMVDDKSPLVEESEALVSEEKEKQKEDRVDSVRREVESGTECTEGSNRYDSFPTHQMIPKADSGR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7541931 7547018 - CmaCh01G010260.1 Cma01g01026 286719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01026 576 SMART serkin_6 230 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01026 576 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 121 132 IPR000152 -
Cma01g01026 576 Gene3D Transferase(Phosphotransferase) domain 1 306 509 - -
Cma01g01026 576 ProSitePatterns Protein kinases ATP-binding region signature. 236 259 IPR017441 GO:0005524
Cma01g01026 576 CDD EGF_CA 69 94 - -
Cma01g01026 576 ProSiteProfiles EGF-like domain profile. 105 139 IPR000742 -
Cma01g01026 576 Gene3D Laminin 108 149 - -
Cma01g01026 576 ProSitePatterns Calcium-binding EGF-like domain signature. 105 130 IPR018097 GO:0005509
Cma01g01026 576 SMART egf_5 108 148 IPR000742 -
Cma01g01026 576 SMART egf_5 57 104 IPR000742 -
Cma01g01026 576 Gene3D Phosphorylase Kinase; domain 1 197 305 - -
Cma01g01026 576 MobiDBLite consensus disorder prediction 524 552 - -
Cma01g01026 576 CDD STKc_IRAK 236 503 - -
Cma01g01026 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
Cma01g01026 576 SUPERFAMILY Protein kinase-like (PK-like) 214 505 IPR011009 -
Cma01g01026 576 Pfam Calcium-binding EGF domain 105 142 IPR001881 GO:0005509
Cma01g01026 576 ProSiteProfiles Protein kinase domain profile. 230 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01026 576 CDD EGF_CA 105 138 - -
Cma01g01026 576 MobiDBLite consensus disorder prediction 524 576 - -
Cma01g01026 576 SMART egfca_6 58 104 IPR001881 GO:0005509
Cma01g01026 576 SMART egfca_6 105 148 IPR001881 GO:0005509
Cma01g01026 576 Pfam Protein kinase domain 230 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01026 576 Gene3D Laminin 56 107 - -
Cma01g01026 576 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 44 519 - -
Cma01g01026 576 SUPERFAMILY Growth factor receptor domain 68 137 IPR009030 -
Cma01g01026 576 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 44 519 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01026 Cma-Chr1:7541931 Cma04g02407 Cma-Chr4:16624131 0 dispersed
Cma01g01026 Cma-Chr1:7541931 Cma15g00109 Cma-Chr15:493811 5.26E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68273 PF00069 Pkinase 6.90E-52 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01026 - - mcha:111021159 915.99