Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01033 ATGAATCGCCGGCAGTGCGTGAGAGCCATTTCGGACACAGAGAGTGAGTCCGATCAAGAAACGATGAAGTGCTTATCGTGTCTGGAGGATTACCGGTCACGCGACGCCGGAACCTGCAAGGAGTGCTACGATGAAGCCAATGAGACTGAGGAAGAGCTCAAGCGTGAGATTGAAGACTTGAAAGCGAAGGTCGCTTTCCTCAGGTTTTGGTCCCCTCTTGATCATCTTCACAGTAGGTCGAATGCACCTTGCTTTACGGATATCGTTTTGATCGCCACCGGCGATGGGCCCGAGGGATATTCTGTGCCCCTTCCGGCTCATAAAGCTGTCTTGGTGAGTCGCTCCCCAGTTTTCAAAGCTATGCTCGAGAACGAAATGGAGGAAAGCCGTAGTGGTACCATAAAGATCAGCGACGTTTCATTTGACGCCCTCCGCACCTTCGTTAATTATCTGTACACAGCAGAAGCCTGTCTTGATGAACAGATGGCTTATGAGCTTCTAGTTTTGGCTGAAAAGTACGAAGTGAAGCATCTGAAGGCTCATTGCGAGAAGTTCCTGATATCAAAACTGAATTGGGACAACTCAATCTTGAACTACACCTTTTCCCATCGGCACAATGGGAAGCATATGATTGATGCAGCGTTAGCGGTGATTATTGAGAACATGGACAAGCTTACCAAAAGGGAGGAGTACATGGAGCTCGTCGAAACGGATCCACGGCTTGTCGTCGAAATCTTTGAAGCTTACATGTCGAAACAGGTAAATACTGCTGCTTCTAAGGATAGTTGTGTGGAATAA 798 47.99 MNRRQCVRAISDTESESDQETMKCLSCLEDYRSRDAGTCKECYDEANETEEELKREIEDLKAKVAFLRFWSPLDHLHSRSNAPCFTDIVLIATGDGPEGYSVPLPAHKAVLVSRSPVFKAMLENEMEESRSGTIKISDVSFDALRTFVNYLYTAEACLDEQMAYELLVLAEKYEVKHLKAHCEKFLISKLNWDNSILNYTFSHRHNGKHMIDAALAVIIENMDKLTKREEYMELVETDPRLVVEIFEAYMSKQVNTAASKDSCVE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7641845 7650279 + CmaCh01G010330.1 Cma01g01033 286726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01033 265 ProSiteProfiles BTB domain profile. 86 160 IPR000210 GO:0005515
Cma01g01033 265 SUPERFAMILY POZ domain 72 188 IPR011333 -
Cma01g01033 265 SMART BTB_4 86 190 IPR000210 GO:0005515
Cma01g01033 265 Coils Coil 39 63 - -
Cma01g01033 265 Gene3D Potassium Channel Kv1.1; Chain A 71 190 IPR011333 -
Cma01g01033 265 CDD BTB_POZ_ZBTB_KLHL-like 85 173 - -
Cma01g01033 265 PANTHER GH01369P 3 263 - -
Cma01g01033 265 Pfam BTB/POZ domain 84 189 IPR000210 GO:0005515
Cma01g01033 265 Gene3D - 191 262 - -
Cma01g01033 265 PANTHER SPECKLE-TYPE POZ PROTEIN 3 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01033 K10523 SPOP; speckle-type POZ protein - csv:101206278 472.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01033 Cma-Chr1:7641845 Cma09g01038 Cma-Chr9:5356927 1.39E-12 dispersed
Cma09g00057 Cma-Chr9:256517 Cma01g01033 Cma-Chr1:7641845 9.26E-07 dispersed
Cma01g01033 Cma-Chr1:7641845 Cma09g01050 Cma-Chr9:5477873 1.02E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34311 PF00651 BTB 3.50E-24 CL0033 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01033 Cma_Chr01 FPKM 2.142697 4.084126 4.806206 3.710046 7.940572 9.596717 4.955706 3.853096 3.223486 3.317898