Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01036 ATGGATTTGCCTCCATTTCTTTACCACCAACGGGATCAATCCAGGTATATCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCGCCCCTCTTCCTCACCCTTTTTTTCCGGACGATCCCAATTTCCACTTCCCTTCCAATCACCATCAGGTTCTTCATAACATTCCCGATAAAGGGCTAGATTTCCCTCTGCGGCCGCCACCGCCACCGCCGTCGTACCGTCATCCTCCGATTCATCCACTCCCGTCACAAGCACCGCCGCTAGGTTATAATCCCTCTCAACCACACTTCGTTGTTTCTTCCTCGATTCATGATGACCAATTGAGGTCTCCCCACCCTGTTCGCGAATTTCCGCGCTCCCCTCCGCTTTCCAGTCGAGTTTCTTTCGACGGAGGGTTTCACCGCGATTTTGTTGACCTAAATCATTCGTTCCATGAAACTCGGTTTGATATTTCGGATCCATCGAGAGGCTCTGCGGATAATCGACCTCCAATTCCGCATTCTCCTATCGATATTCAGCATGGAGCTGGCCACCGAGAAATTGATTACAGATCTGTCATGCCGTATCCGCCCCCTGATATGTTTAGGTATAGTTCAGGTAGTAGTTCTAGGCGGGGAGCGGAATACAATGATAGATTTCAGACAAATCCAAGAGAAGAGGTGCTACGGGGACGAGGTGAGGAGAATTATTATCACCACGATCAGCTTAAAGCTGATTCCAATATCACCTTTATGGAATCTGGAGCGATGCAGAGTCCATTATCTAGAGATAACAAATTTACTTCTGGTAGTTTTGATAAACATCGCTATGGCTCGAATTATGAAAAAGAATCTTTTAGGAGTCGTAGGAATGGTAATGTGGTGGGTAAAAATCAGAGATGGGTTCATAGCAAACAAACCTTTAGAAACATGCACAATTCATACTCAGATGGAAGCAATGATAGAGGATATGGTGACCGTAGTGATTTTCGAATTATGTCTGGTAAGCATGGACATTCTAATCCAGAATCAGGAAAATATTACAGTGACAATAAGGATAGTATAGAAGGTTATAATGAGTACATGTCCACTCCACGGAAGCAGGTACAGAAAAAGAGTGCTTTTCTCAGAATTCAGATGGCAAATCCTTGTCACGGTAACCGAGAGAGTGAACAATTACACGATTCTGATTATTTTGATGAGAAGAACGGTTTCCACAGAGGCAAAAATCAGGTTCGATCTCAGGGCTACAGAATAGATGCAGGGAAGAAGAGACAGGGAAGTCCTATGGAGCTTGATGTTTCTTTTAAATCCAATTCATTGGTGGCCAAGGCAATCGTGACACCAACACAGTCTGCTCCGACTTCTCATATGGATAAAATGCCTGGATATGAAAAAACTACAAATGTTTTGGTTCTCGTTCCCCACCATAACTCTACTGACTTGCATTTAACGGGTAAGAACAAGGATGATTTAGGCACAAATGATGTTACAAATCCTGCCCCATGCCCCCCAGGTTCTAAAAATGAGCTGAAAGAATCAGATGAGAAGGCTACAGGTTCGTTGGCTGGTAATGGATCTAACAATTTAACAGATGTTTCTTTGGTTAAGGGCAATTATTCACTTAGAAAAACTAACGTTGAAAGACCTTCACAAGGAATGGTGTCAGGTATAAAAGGAAGGAATGCTTATGGAAAAGTAGCTACTGTGAGAACCATGAAGAAGAAAAAGGTTGTGAGGAAAGTAGTGAAGAAGGTAGGAAGTCCCCGACTGTATTTACAGACAAGAAGCAGCAATGTTAACCCTTTGAAAGCATGTAGCTTGAAAAATATTCCGCCGGTTTCAGAAAACAAGTCTTCCACATCTGGAATGAACTCAGATCATGGTTCTGCGTTGAAGGCTTCTCAGCATGGTATGTCTGGATCACTAGATAATGGAAAAGCAGATCAGTCTGTCCTGCCTATAACATCAGAAGAGTTTCAAGCCAACACTGATATGGGCATGGAATGTGTACCTGCAGATGATAGTAATAAAAATAACTTCGATTCTCCTTTGAATCCCTTGATAAAAGAGGCAAGAGGATCTAGTAATCAAATTGAGAGAAACAGTTCTTTCATTTCCGTTCCACCTCTTTTAAATTCTAATAAGGATCTTAAACTATCAAATGGACCTAATGACTTCGATTTTGAATGTCAGAAGTCAATCAAGCCTAAACTTTGTGGGAATGAAGAAGACTTGTCATTTGAGAATGTATATAGTAAAGGGTCTAAATCTATCATGTTTTCCCTAGGAAGCAGTCAGTCTGGAATAGTGAGTTCAAATGATCCTAATCTACATGATAATCTTGTAAAGGGAAATAGTTTGGCTGTTAATAAAGACGTTCCCATGGATTTTGATAATGGGGTAACTCAGGTTCAAGATAATCCACTTTGTGAAACTTTTTTAGCTGATGGAATTTGCCAGCAATGTGCCAACAGGGTAACTGGACCTCCTGAGACTGATGTCGTGGGAGTATCTGCAGCAAAAGTTACAATTAGCAATTCTTTGGTGGGCGTAAATCCAGAAGCATCTGAAATGCAGCAGATTGATTCCAAAAATTTGCAAGACTATAACAGTGGACAACATACTAATCAAGATTCAAATGACTGTCGTCAGTGTACTAATATACGAGTGAATGAGGTTCTTAATTGTGAGAGGATTGGTAGTGCAATGAGAGAATCGAAAGCTATGGATAGTTCTGCTTCACTAGGTATTAGTTCGGTAGAAAGATCTGCCAAAGATAAGGTTTCAATTAGTGGTGGACAAGGTGAGAAATCATTGTCAAAGGTGAGTAAAATTAATAATTGTTTGGATTTTGCAGGTTCTCGTGACATCAATCAGGAGACGAATTCTGTGGATTTATGTGTACGTTCTAATTCTAAAAATTATTGCCCTTCAGAGCAGGGTGTTTCTGGTGATGGAAGCATAATAATAGATGTAAATCCTACCACCACTGAAGAGAGTCCAGTGCCTGATTTCAATTTATTAGGTAAGTCGTCAAAAAATAAGTTGTTGATGGGCTTTGATGTTAATAATAGAGGAAATGAGATCAAGTCCCGAAAGAAGCGAAAGATATGCATTGCTAGTCCTGTTTTGCCTTGCCCCGGTGTTGAATCTAATGAAGTGCCTGCACTTACAGTCATCTCTAGTTTAAATGATCAGTTAACCTCTAATGTTGAGTTAATGGAAGGAGAGGAGGCTGCAGCATCTACTGTGGATGCTTTTTTCAAAGCTAGTCCTGTTTCTACAGATTGTTCGAAAGGGATCAGCAAGATGCTCGATGAGATACCGAAAAAGGAAAATTCCAAAAAAATAAATATTGATGATGGTCCTTTTGAGTATTGCTTGAAATATGAACAACCAGAAAACTCTCGCTCAATCCAGGAGGAGTTGATTGTTTCAAAATGTCAACCACTTTCTTCATTGGGAAATGAGAAAGAAGACAGCAGTACTCCCACAATGGCACCAAATCAAAGAAATGATTTGGATGTAGTCATTTGTAGAAGAAAAGAACTAAATATTCATGCTGAAGCACAATCTATGCTTTGTAATAAGACTGCACAGTGGGATAGTCCTCAAGTTCCATCCTCTCAGACCTTAAATTTTTCATATCCAGAAGCAGTTAAAGCATCTTGTAATCTTGGCCAGGATAATATGCATCATATAGAAAGATGTGCTGATGGTGGCAGCTGCCTCACTGCCAATTCTGACAATGAAATTATAGGCCTTGCAAGTGATACCCAAGGGGATTTGGGTTCTCCAGAAACCTCCAATGTTCATGGGATAGATAAATTACATCGTGAGGTATCTCTCAGAAATATTGACTTCAAAATGGATTGTGAATATGACAAAAAGGTGAAGGAGAAATCTAGTGCTGAAAATGAATTAAGGGCATCGAATGATACTTCATTTCCACAGCCTACGACCATTAATCAGAAATTAGGTTGTACCAATTCTGACAACAATTTGACTGCTGGCAAAGTAGTATCACGGGCATTGGTAGAATTAAAAAGTGGACTTCAAGCTGACAATCGTTCTGCCAACTCGTGCAAGAAAAATCAGAATATGGTTTATCACAAATATCAGACAATTCCTGGTAAATCTTTTTCCACATGCACTGCGTCAAAGAAGATAGCATCTGATAGAAGTTTTCTTGGTACAAAACCCCGAAGTTGGCATCGGAATGTTAACACTCTAGTTCCAGTTCCTGGAAATGCGGCTTTATCAAGTACTATTCCTTCCCAAGGGCAGTTACATGGTGGAGATGGAATGCTTGAGAGTACTTTGTACATTCGTAAAGGTAACAGCCTAGTTCGAAAGCCATCTCCAGTTGCAGCTCGAGTTTCAGGCTCCCATGATTTAAGTTCAAGCTCATCTGATCAACATGATTGCAGACCTAATATAAAATCTAATGGTAAGGTTGAGGTGGCTAATCCTCCTGTCCATTTTAAAGTAAGGGGAACTGATGTTCCTATTGATAAGCCCTTTCCTCCCCAACTATCTAGTGGGTCTGGGTCGCCCAATCATCCTATTCCCTATGCAGAATATGCACCATCTCCTTGCCATGAACCTGAATCAAATCTCACGAAGTCTAAACATGTTAGTGATCTGTCTAGGTCTGTTGGGGATCCCTCGAAGATTTTTGTAGCTCCTAAAAGCCTGGTTGGTACTGCTGATAAGAAAGAACATCTGACTGAAAAAAAAGACAAGAATTTTGTTTCTTCAGTTGTAAAAAAGATGGTGTATGTAAAGAGCAAGTCAAATCAGTTGGTTGCTACTTCTAAACCCTGTAATTTATCAACTAAAAATATGGAGACTACTTGTTCCTTGGCCTCCGATGGCTATTACAAGAAGAAAAAGAATCAGTTGATCAGGGCATCATCAGAATGTCAGATGAAGCAGACTTCACTCCCCACCGAAGATATTTTGAACCCAGGAGGTCCAAGCTCTTATGGAGATGGAGATGCTAGAAGTTTTGATAAGATACAACAATATAAAGCTGTAGTGAGAACATATAGGCCGTCAAAGTCCTCTTTGGTATGGACACTTCGCACTTCTGTTGCTCCAGGAATTGGTGGTGGTAATTTGCAGAATCATAAGATGGCTCCTCGTCTTTTTCCTTGGAAAAGATCACATTGGAAGACCTTCAAGCTAAACGCTTCTACTCAGAGAAACAGCTCTTTCTCTATTGTCAGAAAATTGTTGCTGATGAGGAACAGGAACACAGTTTATAAAAGATCAAAACATGGATTTTCACTTAGAAAATCCAAGGTACTAAGTATTGGCAGGTCTAGTTTAAAGTGGTCCAAATCCATTGAAAAGCACTCAAAGAAAGCTAATGAGGAAGCTACGAAGGCAGTTGCTGATGTCGAAAGGAAGAAAAGGGAGCGTAATTTGGATGCATCTATTTCCTCTGATGCTCCGGGTGGAAATCAGTTTTCCTATGACCAAGCATCCGGTTCTACTCTGCAACCAAAAAAGACTGCTAAGAAATTTTTTATTCCACGGAGTCTAATGATTGGAAATGACGAATATGTTAAGATTGGAAATGGCAATCAGTTGGTCAGAAATACAAAAAGACGAGCACGCATATTGGCAAATGAGAAAATTCGATGGAGTTTGCACACTGCAAGACAGCGTCTGGCTAAGAAGGGGAAGTACTGTCAATTTTTTACAAGATTTGGCAAGTGTAACAAAGAAGGTGGCAAGTGCCCTTATATTCACGACACTTCCAAGATTGCAGTCTGCACAAAATTTCTTAATGGTTTATGTTCTAACGCAAGCTGCAAATTGACTCATAAGGTCATTCCAGAAAGGATGCCTGATTGTTCATACTTTTTACAGGGTTTATGCAGCAGCAAAAATTGTGCTTATAGACATGTAAATGTGAACTCAAAGGCCCCTACTTGCCAGGCTTTTCTCAGGGGTTATTGTGCTCTTGGCGACGAGTGCCGTAAGAAGCACAGTTATGTATGCCCCTTGTTCGAAGCAACAGGTACATGTCCTGATAGACCCAAGTGCAAACTTCACCATCCTAAAAGACAAACTAAAGGAAGAAAAAGGAAACGATCAGAAGGGAAGAATAACGATCAAGGACGGTACTTTGGTTCTAAGAAATACAATGTTTTTGGGTCGAGAATGGTGGTGAGTGAGAAGCATCCTGTTAAGTTGAGTGATCCTTTTCCTGAAAAAGATCTGGCAGATTATATCAGCCTCGACGTTTCTAGTGATGAAGAGATTGCAAAAAGCCCTGACTCAACGAGCCTGAGTACGTCCTTTTGCGAAGGTTACCTCTCAGAGTTACTACTAAACAATCCCGACAAGCTAATCAAACCAGTTCGGATAATGACCGAGAATCTGACGATGCAATCGCTGGCAAACTGA 6411 40.82 MDLPPFLYHQRDQSRYISPPPPPPPPPPPSSAPLPHPFFPDDPNFHFPSNHHQVLHNIPDKGLDFPLRPPPPPPSYRHPPIHPLPSQAPPLGYNPSQPHFVVSSSIHDDQLRSPHPVREFPRSPPLSSRVSFDGGFHRDFVDLNHSFHETRFDISDPSRGSADNRPPIPHSPIDIQHGAGHREIDYRSVMPYPPPDMFRYSSGSSSRRGAEYNDRFQTNPREEVLRGRGEENYYHHDQLKADSNITFMESGAMQSPLSRDNKFTSGSFDKHRYGSNYEKESFRSRRNGNVVGKNQRWVHSKQTFRNMHNSYSDGSNDRGYGDRSDFRIMSGKHGHSNPESGKYYSDNKDSIEGYNEYMSTPRKQVQKKSAFLRIQMANPCHGNRESEQLHDSDYFDEKNGFHRGKNQVRSQGYRIDAGKKRQGSPMELDVSFKSNSLVAKAIVTPTQSAPTSHMDKMPGYEKTTNVLVLVPHHNSTDLHLTGKNKDDLGTNDVTNPAPCPPGSKNELKESDEKATGSLAGNGSNNLTDVSLVKGNYSLRKTNVERPSQGMVSGIKGRNAYGKVATVRTMKKKKVVRKVVKKVGSPRLYLQTRSSNVNPLKACSLKNIPPVSENKSSTSGMNSDHGSALKASQHGMSGSLDNGKADQSVLPITSEEFQANTDMGMECVPADDSNKNNFDSPLNPLIKEARGSSNQIERNSSFISVPPLLNSNKDLKLSNGPNDFDFECQKSIKPKLCGNEEDLSFENVYSKGSKSIMFSLGSSQSGIVSSNDPNLHDNLVKGNSLAVNKDVPMDFDNGVTQVQDNPLCETFLADGICQQCANRVTGPPETDVVGVSAAKVTISNSLVGVNPEASEMQQIDSKNLQDYNSGQHTNQDSNDCRQCTNIRVNEVLNCERIGSAMRESKAMDSSASLGISSVERSAKDKVSISGGQGEKSLSKVSKINNCLDFAGSRDINQETNSVDLCVRSNSKNYCPSEQGVSGDGSIIIDVNPTTTEESPVPDFNLLGKSSKNKLLMGFDVNNRGNEIKSRKKRKICIASPVLPCPGVESNEVPALTVISSLNDQLTSNVELMEGEEAAASTVDAFFKASPVSTDCSKGISKMLDEIPKKENSKKINIDDGPFEYCLKYEQPENSRSIQEELIVSKCQPLSSLGNEKEDSSTPTMAPNQRNDLDVVICRRKELNIHAEAQSMLCNKTAQWDSPQVPSSQTLNFSYPEAVKASCNLGQDNMHHIERCADGGSCLTANSDNEIIGLASDTQGDLGSPETSNVHGIDKLHREVSLRNIDFKMDCEYDKKVKEKSSAENELRASNDTSFPQPTTINQKLGCTNSDNNLTAGKVVSRALVELKSGLQADNRSANSCKKNQNMVYHKYQTIPGKSFSTCTASKKIASDRSFLGTKPRSWHRNVNTLVPVPGNAALSSTIPSQGQLHGGDGMLESTLYIRKGNSLVRKPSPVAARVSGSHDLSSSSSDQHDCRPNIKSNGKVEVANPPVHFKVRGTDVPIDKPFPPQLSSGSGSPNHPIPYAEYAPSPCHEPESNLTKSKHVSDLSRSVGDPSKIFVAPKSLVGTADKKEHLTEKKDKNFVSSVVKKMVYVKSKSNQLVATSKPCNLSTKNMETTCSLASDGYYKKKKNQLIRASSECQMKQTSLPTEDILNPGGPSSYGDGDARSFDKIQQYKAVVRTYRPSKSSLVWTLRTSVAPGIGGGNLQNHKMAPRLFPWKRSHWKTFKLNASTQRNSSFSIVRKLLLMRNRNTVYKRSKHGFSLRKSKVLSIGRSSLKWSKSIEKHSKKANEEATKAVADVERKKRERNLDASISSDAPGGNQFSYDQASGSTLQPKKTAKKFFIPRSLMIGNDEYVKIGNGNQLVRNTKRRARILANEKIRWSLHTARQRLAKKGKYCQFFTRFGKCNKEGGKCPYIHDTSKIAVCTKFLNGLCSNASCKLTHKVIPERMPDCSYFLQGLCSSKNCAYRHVNVNSKAPTCQAFLRGYCALGDECRKKHSYVCPLFEATGTCPDRPKCKLHHPKRQTKGRKRKRSEGKNNDQGRYFGSKKYNVFGSRMVVSEKHPVKLSDPFPEKDLADYISLDVSSDEEIAKSPDSTSLSTSFCEGYLSELLLNNPDKLIKPVRIMTENLTMQSLAN 2136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7656463 7667614 - CmaCh01G010360.1 Cma01g01036 286729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1450 1549 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 64 92 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1786 1810 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 476 526 - -
Cma01g01036 2136 PANTHER CCCH ZINGC FINGER 1267 2127 - -
Cma01g01036 2136 PANTHER CCCH ZINGC FINGER 419 1208 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1813 1831 - -
Cma01g01036 2136 ProSiteProfiles Zinc finger C3H1-type profile. 1973 2000 IPR000571 GO:0046872
Cma01g01036 2136 Gene3D - 1974 2035 - -
Cma01g01036 2136 Coils Coil 1785 1805 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1786 1831 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1644 1664 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 16 42 - -
Cma01g01036 2136 SMART c3hfinal6 1891 1919 IPR000571 GO:0046872
Cma01g01036 2136 SMART c3hfinal6 1920 1944 IPR000571 GO:0046872
Cma01g01036 2136 SMART c3hfinal6 1946 1971 IPR000571 GO:0046872
Cma01g01036 2136 SMART c3hfinal6 1973 1999 IPR000571 GO:0046872
Cma01g01036 2136 SMART c3hfinal6 2000 2022 IPR000571 GO:0046872
Cma01g01036 2136 MobiDBLite consensus disorder prediction 608 642 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1300 1324 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 2019 2042 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 151 179 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1305 1324 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 607 642 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 400 426 - -
Cma01g01036 2136 Gene3D - 1918 1973 - -
Cma01g01036 2136 ProSiteProfiles Zinc finger C3H1-type profile. 1946 1972 IPR000571 GO:0046872
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1458 1474 - -
Cma01g01036 2136 MobiDBLite consensus disorder prediction 1 93 - -
Cma01g01036 2136 ProSiteProfiles Zinc finger C3H1-type profile. 1891 1920 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01036 - - - cmax:111480500 4184.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01036 Cma-Chr1:7656463 Cma18g00507 Cma-Chr18:3030253 2.45E-08 dispersed
Cma01g01036 Cma-Chr1:7656463 Cma13g00496 Cma-Chr13:5304634 1.93E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g208 . . . . . . . . . . Cma01g01036 . Car01g00911 . . . . . . . . . . . . . . . . . . Cone4ag1435 Cone7ag1500 . . . . . . Blo17g00165 . . . . Bpe14g00400 . Bma02g00201 . Cmo01g01075 . . . . . . Cpe02g00855 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003643 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 2 3 12 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34312 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01036 Cma_Chr01 FPKM 11.106713 12.284595 11.540066 11.374833 18.487961 16.962177 18.04137 13.048674 11.758889 12.662433