Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01037 ATGGCGTCGTCTGGCAGCGGATTGACATTCAAACTGCATCCTCTTGTGATTGTGAACATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCCTCCTTAAGCAGTTCATCTCCATCCCCATGCGCCCTAAGTAATGGCGCCGATGTAGCCGCTTCTGCGGGCCTTTCCACTTCTCCTCCTGCTCCTAGGGTTTACGGTTGTGTTGTTGGCGTTCAGAAAGGCCGCACGGTTGAGATCTTCAACAGCTTTGAGCTTCTGTATGATCCCAAAACTCATTCACTGGACCGCACCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCATGGAGTCTGACATGCATATCCATAAGGCTTTGATGGATATCAATGAAAGTCCTGTCTATGTTCTTCTTGATCCTTCCATTAATCATGCTCAAAAGGATCTCCCAGTTACTATATACGAGAGTGTAGAAGCTGAGCGAATATCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCAACTCAACTGGCTGCTCACCTTGCGGGTATTCACAGTGCCATCAAAATGCTGAACAGCAGAATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTGATATTCCTCTGGAGAATTCTCTACTAAGACAAGTGTCTAGTTTACTCAGAAGATTACCAGTTATTGAATCAGAAAAGTTTCGAGATGATTTCTTGACGGAATATACTGATACAATGTTGATTACATACCTAGCAATGTCCACTAATTGCTCAAGTGCAATGAATGAGCTGATTGAAAAATTCAACATTGCATATGACCGCCATAGTCGAAGAGGGGGCCGAACGGGACCAAGTGTATTACAGAAGGTTCAGTGCCACACCGAGCGTCCCTAA 951 44.58 MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSSSSPSPCALSNGADVAASAGLSTSPPAPRVYGCVVGVQKGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAMESDMHIHKALMDINESPVYVLLDPSINHAQKDLPVTIYESVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAMQNGDIPLENSLLRQVSSLLRRLPVIESEKFRDDFLTEYTDTMLITYLAMSTNCSSAMNELIEKFNIAYDRHSRRGGRTGPSVLQKVQCHTERP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7668170 7678448 - CmaCh01G010370.1 Cma01g01037 286730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01037 316 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 169 - -
Cma01g01037 316 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 6 145 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma01g01037 316 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 168 301 - -
Cma01g01037 316 Gene3D Cytidine Deaminase, domain 2 1 185 - -
Cma01g01037 316 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 169 - -
Cma01g01037 316 Pfam Maintenance of mitochondrial structure and function 171 285 IPR024969 -
Cma01g01037 316 ProSiteProfiles MPN domain profile. 45 173 IPR037518 -
Cma01g01037 316 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 168 301 - -
Cma01g01037 316 SMART pad1_6 9 172 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma01g01037 316 CDD MPN_CSN6 8 300 IPR033859 GO:0000338|GO:0008180
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01037 K12179 COPS6, CSN6; COP9 signalosome complex subunit 6 - csv:101216874 530.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01037 Cma-Chr1:7668170 Cma06g00238 Cma-Chr6:1209242 2.14E-18 dispersed
Cma01g01037 Cma-Chr1:7668170 Cma09g01047 Cma-Chr9:5438843 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g802 . . . Bda09g00455 . Bpe08g01071 . . . . Cma01g01037 . Car01g00912 . . . Cpe02g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01230 . . Cmo01g01076 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006191 2 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01037 Cma_Chr01 FPKM 11.309148 12.681198 14.714628 14.557106 16.432383 14.906808 18.999426 16.906912 17.844316 17.671581