Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01040 ATGCATCCCCGTCACCGTAATACGGGAAATGGATTTAGGTCTAGTTCCATGGGAGTGGGATTAGCTTCTTCTCGAATCTCTCCAGAGGGATCGGTTAGGGGCCATGGTAGCATATATGGCAATGATTATCGCAACTTTAATCATCCGAGTGGCTTTGGGCGCGGTCAGGGATACCCCAAATCATATCAATCATCCCAGTCACTGCCTCCTCCGCGCAGAGGTGGGGGTTCTGTTGACATTTTTATGGAAGCAGGTCGCCTTGCAGCTGAATACCTAGTTTTTCAAGGTTTGCTCCCATCTAGTGTTTTACATGGTAAATGGCAAGGTGGAAGCTTGAGGAGGGAGTCTTCTGAGTTTCAGGAATTAGGTCAACTTCGAGAAGAAGGACGAGCGTCTACTGCTTCCCCTCATTCGGGACATATGGGACCTGATTCCGGGTCAGGGTGGAGGCAGCCTCCTGATGAATATGGTTCAGCATCACGAAATCATTTGAGAGGCCGAAGAAGAACCTCATCCTTCCGTAGTAGTGGCTCTGATTGGAGTGGCCAAGGTAGGAGCAATAATTACAATGATAGAGCGAGAGCTTCTCCAGATACAGAAGCTTATGAGGACGCTGATAATCTTTCTGCTTATAGTAATCAACAGCAAAGTGGTGAAGAAATTGTTTCTGAACTGCAAGATCTCAAACCTTCCAAGTTAGGACGAAAAGGTGACACACCTGAGGATTCTGGACCTGAACTGGTTAAGTACCCTTTGCCGGATGATGTAGGCTCAAAGGCAAGTACTTCTGCTGTTGTGAAAGATCTTCCATGTGAGAAGAAACTTGCTAAAGATTCTGATGATTTAGGTAACATAGATTCAGGGTCTGAGGATGTGAAAAATACTGCCAGTATTAATGAAACTGAGAAACATTGTGTGACCGAGAAACTATCCATCCAGAACAAAGCTGCTGATGGTGATCCCTTGGTAAAGCAAGAAACTGATCTACTAGCATTCTGCAGATTTGCTAAGTTCCCCACTAAAACTCGCTCTGCATTGGCGTACAAGGTTTCTAAGGCCGATCCTATTACAACTGTGTCAGAACGACCTTCTGATATTAACCCTAACAGAGAATCTGAAATTTCACTCGACAGTGACTCTTCCAGTTGTGCATTATCTGGTGCTGTATCAGCTAAAAAACATGATGTTGAGCATCTGAACTCTGAAAGATCTAAACTGGAAGCTGTTGAGGAAACTGGTATAATAGAGGAGCTATATCCTAGATTTGGTGAGAAGACAAGCTCTTTGACGTCTCAATCTTTCCAGCAGGGACCATTTTGGAACGAGAACAAGGAAGAATCTTGCCAAAGTCCTGCCATATTTGAACGGACAGATTCTATGTTTGAGGATAGGGGTAAGAAACGATCTTTGGATGAGAGTGATGTGGTGGAGGGGAGTAGTAAAAAACCAAGAGAATGGATTCCGTTGATGACTTCTAAGGAAGATGAATCCTTTGACCTTCTGAAGTTTGATAAAACGAAAGTTAATTCTGAGGAAAACAAGCCTGATCATGAAGTTATTGTAGCAGCTAACTGTGTGAACTCAGTGCAGGGTTTTCATTTCATGAAAGGCGGGGGTGAGCATTGTGTTGATTATGCACAAGAAAAGCAGCTTTTTCCGAATTCATTTAAGATCTGTGACCTTAACCTTATGGAGGCTTCTGATATACATGATAATCACGAAAATAATCCGCTTCTCATCTTCCCATCTATTTCTGAAACAAAAAGAGAAAGAACTCCTGTTGATATTGACTTGTCCATAAGCAGTGCTCCTGAATTTGGTCAAAATGGTGTGGTGACTGGCAGTAAAGAGATTGAAATTATTGATTTGGAAGATGACTCTGCTGTCGAAGTAGACAAGACCTTCCATAATACAGAGAGAAAGAGGGAAACTGTATTTAATGGATTGGATGGCTTTCCCAACAACGCACAAAATAATGGAGATATGCCTGATGTTCATGATGGCTATGGAATTATGATTTCGGAGTTGCTTGGAGCAGAATTCCCTAACTGTGCTTCTGTTCAAGGAGACCTTAACTCAATGAACAATGAAATGCCTCTACCGAACGGAGAAGGTACTCTGGCGGATGATGATCTAATATACATGTCCCTTGGAGAAATTCCATTGAGAGTTGTGTATTATTCAAAAGAAGGATATGGGCACGCAAATTCTGCAAGAGCTGAGCAGCAAATATTGGCTGTGTATTTAGGCCCCTTGCACTTGCCTGTGATGATGTATAGTGGTCAACAAGAACGACAAAAATGGGGCGCTCAGAGTGTAAAAAAAGGCCATGAGAAGAGAAGTACAAGTCCAGAGGCAACGATGATTGCAGGAGATCGACATTTTGAGAGCGGGGTCGAGTTTGGATGGGATGGAGCTGGCAATTGA 2427 43.18 MHPRHRNTGNGFRSSSMGVGLASSRISPEGSVRGHGSIYGNDYRNFNHPSGFGRGQGYPKSYQSSQSLPPPRRGGGSVDIFMEAGRLAAEYLVFQGLLPSSVLHGKWQGGSLRRESSEFQELGQLREEGRASTASPHSGHMGPDSGSGWRQPPDEYGSASRNHLRGRRRTSSFRSSGSDWSGQGRSNNYNDRARASPDTEAYEDADNLSAYSNQQQSGEEIVSELQDLKPSKLGRKGDTPEDSGPELVKYPLPDDVGSKASTSAVVKDLPCEKKLAKDSDDLGNIDSGSEDVKNTASINETEKHCVTEKLSIQNKAADGDPLVKQETDLLAFCRFAKFPTKTRSALAYKVSKADPITTVSERPSDINPNRESEISLDSDSSSCALSGAVSAKKHDVEHLNSERSKLEAVEETGIIEELYPRFGEKTSSLTSQSFQQGPFWNENKEESCQSPAIFERTDSMFEDRGKKRSLDESDVVEGSSKKPREWIPLMTSKEDESFDLLKFDKTKVNSEENKPDHEVIVAANCVNSVQGFHFMKGGGEHCVDYAQEKQLFPNSFKICDLNLMEASDIHDNHENNPLLIFPSISETKRERTPVDIDLSISSAPEFGQNGVVTGSKEIEIIDLEDDSAVEVDKTFHNTERKRETVFNGLDGFPNNAQNNGDMPDVHDGYGIMISELLGAEFPNCASVQGDLNSMNNEMPLPNGEGTLADDDLIYMSLGEIPLRVVYYSKEGYGHANSARAEQQILAVYLGPLHLPVMMYSGQQERQKWGAQSVKKGHEKRSTSPEATMIAGDRHFESGVEFGWDGAGN 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7691606 7700303 + CmaCh01G010400.1 Cma01g01040 286733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01040 808 MobiDBLite consensus disorder prediction 227 243 - -
Cma01g01040 808 PANTHER PROTEIN, PUTATIVE-RELATED 1 723 IPR040276 -
Cma01g01040 808 MobiDBLite consensus disorder prediction 48 76 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 171 194 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 57 71 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 118 203 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 359 379 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 277 296 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 1 33 - -
Cma01g01040 808 PANTHER PROTEIN, PUTATIVE-RELATED 1 723 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 8 22 - -
Cma01g01040 808 MobiDBLite consensus disorder prediction 227 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01040 - - - csv:101217113 1169.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01040 Cma09g01046 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01040 Cma-Chr1:7691606 Cma09g01046 Cma-Chr9:5433544 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g791 . Blo03g01496 . Bda09g00454 . Bpe08g01072 . . . . Cma01g01040 Cma09g01046 Car01g00914 Car09g00953 Sed07g2784 Cpe06g00853 Cpe02g00852 Bhi09g01848 Tan01g3262 Cmetu01g0448 . . Mch11g1337 . . . . . . . . . . . . Lsi02g01782 Csa07g01040 . . . . . . . . Bma07g01231 . . Cmo01g01079 Cmo09g01052 . . . . . . . . . . . . . Cla09g02118 Cam09g2205 Cec09g2278 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004841 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01040 Cma_Chr01 FPKM 19.111019 25.453978 14.526621 16.766239 16.40649 14.687222 16.91584 24.170881 24.126938 26.842392