Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01054 | ATGAGCGTCATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTATGACAAATACGACGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGACGATGCCTTTGCTCGACTTTATGCTACTGTCGAAGCCGACATTGAAGCTGCCCTCCAGAAAGCGGAGGATGCTTCCGGAGAAAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGATACCCAAGTTGCAGAGATTGGCTCTAAAGAGGGTGAAGGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCCGATAGGATTCAAGCCATACCAGATGGGACTGCTACTTCCACAAAGAAGAATGGGGGTTGGACATCCTCTGCTTCACGCACTGAAATAAAATTTGACTCAGACGGCCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCGAGCCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATCGACACTAAGGTGGACAAGGCTGCATCTGATCTTAAGAATACCAACGTCAGATTAAAGCACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTATTGTGCATAATCTTGGGTATTGCTGCCTACCTATACAAGTAA | 786 | 46.06 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASGEKNRASVVALNAEIRRTKARLLEEIPKLQRLALKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTATSTKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIILLCIILGIAAYLYK | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7801533 | 7804045 | + | CmaCh01G010540.1 | Cma01g01054 | 286747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01054 | 261 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
Cma01g01054 | 261 | Gene3D | - | 170 | 231 | - | - | |
Cma01g01054 | 261 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
Cma01g01054 | 261 | SUPERFAMILY | SNARE fusion complex | 163 | 230 | - | - | |
Cma01g01054 | 261 | CDD | SNARE_Qc | 175 | 231 | - | - | |
Cma01g01054 | 261 | Coils | Coil | 70 | 90 | - | - | |
Cma01g01054 | 261 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cma01g01054 | 261 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - | |
Cma01g01054 | 261 | PANTHER | SYNTAXIN-73 | 1 | 260 | - | - | |
Cma01g01054 | 261 | Coils | Coil | 40 | 60 | - | - | |
Cma01g01054 | 261 | PANTHER | SYNTAXIN | 1 | 260 | IPR045242 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01054 | Cma-Chr1:7801533 | Cma02g00885 | Cma-Chr2:5257841 | 4.59E-123 | dispersed | |
Cma01g01054 | Cma-Chr1:7801533 | Cma14g00203 | Cma-Chr14:874017 | 6.49E-174 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01054 | K08506 | - | csv:101215905 | 481.485 |