Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01054 ATGAGCGTCATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTATGACAAATACGACGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGACGATGCCTTTGCTCGACTTTATGCTACTGTCGAAGCCGACATTGAAGCTGCCCTCCAGAAAGCGGAGGATGCTTCCGGAGAAAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGATACCCAAGTTGCAGAGATTGGCTCTAAAGAGGGTGAAGGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCCGATAGGATTCAAGCCATACCAGATGGGACTGCTACTTCCACAAAGAAGAATGGGGGTTGGACATCCTCTGCTTCACGCACTGAAATAAAATTTGACTCAGACGGCCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCGAGCCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATCGACACTAAGGTGGACAAGGCTGCATCTGATCTTAAGAATACCAACGTCAGATTAAAGCACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTATTGTGCATAATCTTGGGTATTGCTGCCTACCTATACAAGTAA 786 46.06 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASGEKNRASVVALNAEIRRTKARLLEEIPKLQRLALKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTATSTKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIILLCIILGIAAYLYK 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7801533 7804045 + CmaCh01G010540.1 Cma01g01054 286747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01054 261 Pfam SNARE domain 207 256 IPR000727 -
Cma01g01054 261 Gene3D - 170 231 - -
Cma01g01054 261 SMART tSNARE_6 165 232 IPR000727 -
Cma01g01054 261 SUPERFAMILY SNARE fusion complex 163 230 - -
Cma01g01054 261 CDD SNARE_Qc 175 231 - -
Cma01g01054 261 Coils Coil 70 90 - -
Cma01g01054 261 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma01g01054 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cma01g01054 261 PANTHER SYNTAXIN-73 1 260 - -
Cma01g01054 261 Coils Coil 40 60 - -
Cma01g01054 261 PANTHER SYNTAXIN 1 260 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01054 Cma-Chr1:7801533 Cma02g00885 Cma-Chr2:5257841 4.59E-123 dispersed
Cma01g01054 Cma-Chr1:7801533 Cma14g00203 Cma-Chr14:874017 6.49E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01054 K08506 - csv:101215905 481.485