Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01058 ATGCCGCAGGAATTCAGTTTTCGGAGTTCGATTTTGACGTCTCCGAACAAGAATATGAGAGGATTGAAGGCTTTGGTTCCGAATTGTAATGAGATTACTTCTAATTCCGCGATTTCTGAGGAAGTTATCAACGACGATGAATTGGCTCAGCGGAAAGCGGAAGAAGCTGCATTGAGGAGGAATCAAGCAGTAGAATGGCTACGCCAAATGGATCATGGAGCATTAGGAGTACTATCGAAGGAGCCCTCAGAAGAAGAGTTCTGTCTCGCTCTTCGCAATGGCCTTATCCTCTGCATCGTCCTCAACAAAGTAAACCCCGGTGTTGTTCCCAAGGTAGTGGAGAGTCCAGTTCTGACAGTTCAATCAACCGAAGGAGCTGCTCAATCTGCAATCCAGTATTTTGAAAACATGAGGAACTTCTTGGAGGCAGTTAAAAACATGAAGCTCTTGACATTCGAAGCTTCCGACTTGGAAAAGGGAGGTACTTCAGGTAAAGTTGTGGAGTGTATTCTTTGCTTGAAAGGATATTATGAGTGGAAACAAGCTGGTGGGATTGGCGTTTGGAGATATGGAGGAACTGTACGGATCACTTCTCTTGCCAAAAGTTCACCATCCGTGACTGGAACTGAGAGTACAGACGAGTCGGTAGATGAATCGGATTCGTCTCGGTTCGAGCAGCTACTAGACTTCCTCCATCTTTCTAATGAAGTTTCAGTTGAAGAATCAAGAACTTGCCGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTCAAACTTCTACAAGCTTACCTTAAAGAGACTAACGAAGTTGAAGATTGGCCTTTAAATGCAATGGTGATTGATGCACTACTTAACAAGGTTGTCAAGGATTTTTCTGCACTGCTTATGTCTCAAGGCACTCAGCTTGGGCTCTTTCTGAAAAAGATATTGAAAAGTGAATTAAGTTCATTATCCAAATCTGAATTCATAGAAGCAATTTCTCGATACATCAGTCAAAGAGCTAATATGGCATCAAGTGATATCTCCAAATTCTGTGTTTGTGGAGGAAAACGTGAGGTTATTCATAGGACTGCTTTTGGCCATGAAGAACAAGTTCGTGCTCAACAGAATCAAATTCAGGAGCTAAACTCAGCATTTCAAGAAACCAAGCTTGAAGTTAAACACATACAGTCCCAATGGAATGAGGAAGTTGAAAGGCTTGAACATCATCTCAAGGGCCTTGAGATGGCTTCCTCTTCTTACCACAAGGTCTTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTATACTGTAGAGTGAGGCCTTTCTTGCCAGGACAAGCCAACCAGCATTCTACTGTTGACTATATTGGAGAAAATGGGAACATAATGATTGGAAGAAGAGTATTTTCCTTCAATAAAGTCTATGGAACTAATGTTACCCAAGGAGAAATATATATGGATACTCAACCATTGATCAGATCTGTTCTTGATGGTTTTAATGTATGCATCTTTGCATATGGACAAACGGGCTCGGGAAAGACATACACAATGAGTGGCCCAGATTTGATGAGTGAGGACACATGGGGTGTTAATTATCGAGCTCTCAATGACTTATTCCAAATATCAAATGCAAGATTGGATATGATAAAATATGAAGTTGGTGTTCAAATGATTGAAATATACAACGAGCAAGTGAGAGATTTGTTAGTCAGTGATGGCTCAAACAGAAGGTTAGATATACGAAACAACTCTCAACTAAGTGGCCTTAATGTACCTGATGCAAGCTGGGTTCCTGTGACATGCACTCAAGATGTTCTTCATTTGATGAACATTGGCCACAGTAATCGAGCTATCGGTGCTACGGCGTTAAACGAACGAAGTAGTCGTTCACATAGTGTTTTAATAGTTCATGCTCTTGGGAAAGATTTGGTGTCCGGATCCACCATTAGGGGGCGTCTTCATCTAGTTGATCTAGCTGGTAGTGAAAGAGTGGACAAATCTGAAGCTGTTGGTGACAGATTAAAGGAAGCACAACATATAAACAAATCCCTGTCTGCACTTGGAGATGTGATATCTGCTCTTGCACAAAAGAGTGCTCATATCCCTTACAGAAATAGCAAGCTTACTCAACTCCTTCAAGATTCTTTAGGTGGACAAGCTAAGACATTGATGTTTGTACATATAAATTCCGAGGTCGATGCACTTGGAGAGACGATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCCATTGAATTAGGTGCAGCTCGTTGTAACAAAGAAAACAGTCAAATCCGAGAGCTTAAAGACGAGATATCGAATCTTAAATCAGCTTTAGAGAGTAAGGATACAGAGCTTGAACAGCTAAAGGGTGGCAATGCTCGAGCTCTTGGACACAATCAGAAGCCAAGAACTGCCTCGCCCTTTCGTGTTCTAAGACATGGTACTAATGGAGGTGCTAAGCCTGAACATAGTCAACGGCCTCTGGATGATACTAAAACTTTGAAGGCTAGAAGCTGCTCTTCAGGAAAGCAAAGAAGGTCAAGATTTCCCTCAACATTCACAGAGAAAGATGCAATAAAAATGAGATTGTTAGGTGAAGAGAAATCAACAACAAGTTCAAGCTCTGGAAATCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACAGATAGAGGTGCCCTTTTAAGAAACAAGGTTAAGAAAGAGACGAACGAGAACCAACCAATAGCAAAGCCTACATCATTTCTTGATATCCAAAAAGTAATGGGCTCAACAAAGAAGAAACAACTAGTTTGCCAAGAAAAAAATGAGCAAGATTCAAGAAAGAGTGACTTCTCTGAGATGGAGAATGACCAGTTTCTTGGGGGAATGCCTCTTGGTGGTGCTTTGAAGGTGAAAAAAGCTTGTCACAACTTCCCGAGGAACTCTCAGAATCTGGACCCACCAAGAGTACAAGTTGGGGCTGTTGAAACTTTGCTAAGAACAAGTAGAGTTGAGAATGGGAGTCGCAATCAAAACAAAGTCAGCAATGGATCAATGCCTGAATTTGGAAGAAGCAGATCTACAACTCGCAGGAAATGA 3096 41.47 MPQEFSFRSSILTSPNKNMRGLKALVPNCNEITSNSAISEEVINDDELAQRKAEEAALRRNQAVEWLRQMDHGALGVLSKEPSEEEFCLALRNGLILCIVLNKVNPGVVPKVVESPVLTVQSTEGAAQSAIQYFENMRNFLEAVKNMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLAKSSPSVTGTESTDESVDESDSSRFEQLLDFLHLSNEVSVEESRTCRALAFLFDRFGLKLLQAYLKETNEVEDWPLNAMVIDALLNKVVKDFSALLMSQGTQLGLFLKKILKSELSSLSKSEFIEAISRYISQRANMASSDISKFCVCGGKREVIHRTAFGHEEQVRAQQNQIQELNSAFQETKLEVKHIQSQWNEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLPGQANQHSTVDYIGENGNIMIGRRVFSFNKVYGTNVTQGEIYMDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMSEDTWGVNYRALNDLFQISNARLDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLSGLNVPDASWVPVTCTQDVLHLMNIGHSNRAIGATALNERSSRSHSVLIVHALGKDLVSGSTIRGRLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSAHIPYRNSKLTQLLQDSLGGQAKTLMFVHINSEVDALGETISTLKFAERVASIELGAARCNKENSQIRELKDEISNLKSALESKDTELEQLKGGNARALGHNQKPRTASPFRVLRHGTNGGAKPEHSQRPLDDTKTLKARSCSSGKQRRSRFPSTFTEKDAIKMRLLGEEKSTTSSSSGNPRSPSPPVRRSISTDRGALLRNKVKKETNENQPIAKPTSFLDIQKVMGSTKKKQLVCQEKNEQDSRKSDFSEMENDQFLGGMPLGGALKVKKACHNFPRNSQNLDPPRVQVGAVETLLRTSRVENGSRNQNKVSNGSMPEFGRSRSTTRRK 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7825331 7834849 + CmaCh01G010580.1 Cma01g01058 286751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01058 1031 MobiDBLite consensus disorder prediction 935 950 - -
Cma01g01058 1031 MobiDBLite consensus disorder prediction 837 851 - -
Cma01g01058 1031 MobiDBLite consensus disorder prediction 793 913 - -
Cma01g01058 1031 MobiDBLite consensus disorder prediction 1000 1023 - -
Cma01g01058 1031 ProSiteProfiles Calponin homology (CH) domain profile. 57 178 IPR001715 GO:0005515
Cma01g01058 1031 SUPERFAMILY Calponin-homology domain, CH-domain 59 195 IPR036872 -
Cma01g01058 1031 Coils Coil 760 787 - -
Cma01g01058 1031 PRINTS Kinesin heavy chain signature 500 521 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 PRINTS Kinesin heavy chain signature 623 640 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 PRINTS Kinesin heavy chain signature 654 672 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 PRINTS Kinesin heavy chain signature 703 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 PANTHER KINESIN-LIKE PROTEIN KIN-14F 32 918 - -
Cma01g01058 1031 MobiDBLite consensus disorder prediction 931 950 - -
Cma01g01058 1031 Coils Coil 358 410 - -
Cma01g01058 1031 ProSitePatterns Kinesin motor domain signature. 653 664 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma01g01058 1031 ProSiteProfiles Kinesin motor domain profile. 434 753 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 Gene3D - 49 178 IPR036872 -
Cma01g01058 1031 MobiDBLite consensus disorder prediction 852 867 - -
Cma01g01058 1031 Gene3D Kinesin motor domain 429 794 IPR036961 -
Cma01g01058 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 789 IPR027417 -
Cma01g01058 1031 PANTHER KINESIN-LIKE PROTEIN KLP-3 32 918 - -
Cma01g01058 1031 SMART kinesin_4 432 761 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 Pfam Kinesin motor domain 459 753 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01058 1031 MobiDBLite consensus disorder prediction 1000 1031 - -
Cma01g01058 1031 MobiDBLite consensus disorder prediction 869 890 - -
Cma01g01058 1031 SMART ch_5 59 176 IPR001715 GO:0005515
Cma01g01058 1031 Pfam Calponin homology (CH) domain 60 178 IPR001715 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01058 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 1482.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01058 Cma09g01033 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01058 Cma-Chr1:7825331 Cma14g00920 Cma-Chr14:4770835 0 dispersed
Cma01g01058 Cma-Chr1:7825331 Cma09g01033 Cma-Chr9:5304606 3.28E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01058 Cma_Chr01 FPKM 1.235604 1.638919 0.582566 0.83265 7.741361 7.645328 8.274197 0.806299 0.779375 0.796862