Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01059 ATGCAGAAAGCGGCGCAGGGATGGTTCACGCAAGGGGGTAATAGTGGGAGTGATAATCAACTCAAATCGTCCTCTTCGTTGCTGGCTGATTGGAATTCGTACGCAGAATCACAAGCTTCTGAGGATAGCAGCTCCAATTTGGGAATCGGATTCGATCTCGAAAGTGCTGTTAGGTCTGCCAATGAAACCGTTTCAGGAACTTTCAGCGTGGTTTCGAAAGGAGTGAGAGAACTTCCCGGAAACTTCCAGTCGGCCACTAGTAACGTTCCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATCTTCATTGCGTTCACCATGTTCCTCCCTGTCATGGTTCTTATGCCTCAAAAGTTCGCCATCTGCTTTACTCTTGGCTGCTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCACAGAATCAGCTTGCTCATATGTTCTCTAAAGAGAGACTTCCTTTTACCGCCATCTTTATTGGTAGTATGTTGGGCACTTTATATGTTTCCATGGGGCTTCACAGCTACGTTCTCTCAGTGTTCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTACGCTGTTTCCTATTTTCCTGGCGGGTCTACTGGGATGAAGTTTCTGTCGTCTGCTCTTACGTCGTCGGTAATGAGATGTTTCGGTAGGTGA 693 46.18 MQKAAQGWFTQGGNSGSDNQLKSSSSLLADWNSYAESQASEDSSSNLGIGFDLESAVRSANETVSGTFSVVSKGVRELPGNFQSATSNVPSGKALMYFGLFLATGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCCFIIGSFFALKGPQNQLAHMFSKERLPFTAIFIGSMLGTLYVSMGLHSYVLSVFFSVLQVLALAYYAVSYFPGGSTGMKFLSSALTSSVMRCFGR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7835254 7843830 - CmaCh01G010590.1 Cma01g01059 286752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01059 230 PANTHER UNCHARACTERIZED 6 230 IPR011691 GO:0016021|GO:0016192
Cma01g01059 230 Pfam Got1/Sft2-like family 95 207 IPR007305 GO:0016192
Cma01g01059 230 PANTHER VESICLE TRANSPORT PROTEIN 6 230 - -
Cma01g01059 230 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01059 - - - csv:101220668 418.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01059 Cma-Chr1:7835254 Cma16g00057 Cma-Chr16:244789 7.93E-13 dispersed
Cma01g01059 Cma-Chr1:7835254 Cma09g01031 Cma-Chr9:5293924 3.52E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g724 . Blo03g01486 Bda07g00425 Bda09g00443 . Bpe08g01085 . . . . Cma01g01059 . Car01g00933 Car09g00934 Sed04g3621 Cpe06g00838 Cpe02g00837 Bhi09g01813 Tan01g3230 Cmetu01g1660 . . Mch11g1309 . . . . . . . . Cone6ag0002 Cone9ag0004 . . Lsi02g01806 . . . . . . . Bpe11g00600 . Bma07g01239 . . Cmo01g01100 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001905 3 2 2 2 3 0 3 2 2 2 1 2 2 4 2 2 1 3 3 2 2 2 1 2 2 2 2 3 2 3 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01059 Cma_Chr01 FPKM 12.197541 12.497025 14.463881 14.885899 11.222674 10.310927 11.615193 14.978712 14.046415 16.799261